View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_high_19 (Length: 251)
Name: NF0866_high_19
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_high_19 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 6353400 - 6353170
Alignment:
| Q |
21 |
acatcatcaatcataacaaagatgttgaagaacttaacaaaagatctcaccacagcacttcattccaccattccagtcataaccaatattgcatcctcac |
120 |
Q |
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| T |
6353400 |
acattatcaatcataacaaagatgttgaagaacttaacaaaagatctcaccacagcagttcattccaccattccagtcataaccaatattgcatcctcac |
6353301 |
T |
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| Q |
121 |
aagaatctttgttgcaagatgtttctcaaatcatttcctcaaacacttccaaaatcatatcaaacactaatcctttagagactaacaacaccatttcgtc |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6353300 |
aagactctttgttgcaagatgtttctcaaatcatttcctcaaacacttccaaaatcatatcaaacactaatcctttagagactaacaacaccatttcctc |
6353201 |
T |
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| Q |
221 |
gaacatttcaaaaccactcaccacaatcaca |
251 |
Q |
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| T |
6353200 |
aaacatttcaaaaccactcaccacaatcaca |
6353170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 6352958 - 6352894
Alignment:
| Q |
187 |
ctaatcctttagagactaacaacaccatttcgtcgaacatttcaaaaccactcaccacaatcaca |
251 |
Q |
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||||||| ||||| |||| ||| ||||||| || ||||||||| ||||||||||||||||||| |
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| T |
6352958 |
ctaatccgttagaaactatcaaatccatttcctcaaacatttcatcaccactcaccacaatcaca |
6352894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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