View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_high_3 (Length: 480)
Name: NF0866_high_3
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 22 - 451
Target Start/End: Original strand, 42631567 - 42631996
Alignment:
| Q |
22 |
catcatcacgaacaactttactagctggtaaaatagttagagacaaaacagtccctagtgacataaaagccataaaaccaatataagttccatcattaac |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42631567 |
catcatcacgaacaactttactagctggtaaaatagttagagacaaaacagtccctagtgacataaaagccataaaaccaatataagttccatcattaac |
42631666 |
T |
|
| Q |
122 |
cgtagcagcttgatcaccacgattgtaattaagaataaaaggaatcaacccaccaataacaccacccatgttgaaaatactccagaatattgaaatgtaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42631667 |
cgtagcagcttgatcaccacgattgtaattaagaataaaaggaatcaacccaccaataacaccacccatgttgaaaatactccagaaaattgaaatgtaa |
42631766 |
T |
|
| Q |
222 |
gttcctttacggttcatgggtggataagatgtcataatagcaccttgtgcagcccataatagacctgctccgatgccgagaagggcaccggcaactatag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42631767 |
gttcctttacggttcatgggtggataagatgtcataatagcaccttgtgcagcccataatagacctgctccgatgccgagaagggcaccggcaactatag |
42631866 |
T |
|
| Q |
322 |
caaaagcttgatgttgtttatgattatagtaaaggaaagaaccagcgtagagtacataagttgaacaacctgcgaaaagagttaagtgaggtccgaggat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42631867 |
caaaagcttgatgttgtttatgattatagtaaaggaaagaaccagcgtagagtacataagttgaacaacctgcgaaaagagttaagtgaggtccgaggat |
42631966 |
T |
|
| Q |
422 |
gttgtagatgccaccacctagtataccaaa |
451 |
Q |
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| T |
42631967 |
gttgtagatgccaccacctaggataccaaa |
42631996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 22 - 442
Target Start/End: Original strand, 42638711 - 42639131
Alignment:
| Q |
22 |
catcatcacgaacaactttactagctggtaaaatagttagagacaaaacagtccctagtgacataaaagccataaaaccaatataagttccatcattaac |
121 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
42638711 |
catcatcacgaacaactttactggctggtaaaattgtcagagacaaaacagtccctagtgacataaaagccataaaaccaatataagtgccatcgttaac |
42638810 |
T |
|
| Q |
122 |
cgtagcagcttgatcaccacgattgtaattaagaataaaaggaatcaacccaccaataacaccacccatgttgaaaatactccagaatattgaaatgtaa |
221 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||| |||||||||||| |
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| T |
42638811 |
cgtagcagcttgatcaccacgattgtaattaagaataaaaggaattaaaccaccaataaccccacccatattgaaaatactccagaaaattgaaatgtaa |
42638910 |
T |
|
| Q |
222 |
gttcctttacggttcatgggtggataagatgtcataatagcaccttgtgcagcccataatagacctgctccgatgccgagaagggcaccggcaactatag |
321 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||||||||||||| || |||| ||||| || |
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| T |
42638911 |
gttcctttacgattcatgggtggataagatgtcataatagcaccttgggcagaccataatagtccagctccgatgccgagaacagcgccggaaactacag |
42639010 |
T |
|
| Q |
322 |
caaaagcttgatgttgtttatgattatagtaaaggaaagaaccagcgtagagtacataagttgaacaacctgcgaaaagagttaagtgaggtccgaggat |
421 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||| ||||| | ||| || ||||| | |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
42639011 |
caaaagcttgatgttgtttatgattgtagtagaggaatgaaccggtgtaaaggacataggaggaacaacctgcgaaaagagttaagtggggtccgaggat |
42639110 |
T |
|
| Q |
422 |
gttgtagatgccaccacctag |
442 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
42639111 |
gttgtagatgccaccacctag |
42639131 |
T |
|
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