View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_11 (Length: 347)
Name: NF0866_low_11
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 343
Target Start/End: Complemental strand, 4921566 - 4921253
Alignment:
| Q |
30 |
ttaagctcgtccagagaaaattgatggcatagctcttttataaatgttgaacattgtttcttggacgaacttttatgctttgagtattttgcaagcatat |
129 |
Q |
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||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
4921566 |
ttaagatcgtccagagaaaactcatggcatagttcttttataaatgttgaacattgtttcttggacgaacttctacgctttgagtattttgcaagcatat |
4921467 |
T |
|
| Q |
130 |
ttcccacacgaattccgcttgatagccaatgataaccaagggaggtacnnnnnnntcaagcctacatttcatcataaaacatgaaaagaagcaaaacgac |
229 |
Q |
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| T |
4921466 |
ttcccacacgaattccgcttgatagccaatgataaccaagggaagtacaaaaaaatcaagcctacatttcatcataaaacatgaaaagaagcaaaacgac |
4921367 |
T |
|
| Q |
230 |
ggaaacacgttgggaaaaaatgacatcatgggtaaaatgtaagtatcaaaccattttctaagctaaaactgattctaatgtatggtttttatggtttatt |
329 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4921366 |
ggacacacgttgggaaaaaatgacatcatgggtaaaatgtaagtatcaaaccattttctaagctaaaactgattctaatgtatggtttttatggtttatt |
4921267 |
T |
|
| Q |
330 |
gatattattcgaca |
343 |
Q |
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||||||||| |||| |
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| T |
4921266 |
gatattattggaca |
4921253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 305
Target Start/End: Complemental strand, 4927808 - 4927510
Alignment:
| Q |
30 |
ttaagctcgtccagagaaaattgatggcatagctcttttataaatgttgaacattgtttcttggacgaacttttatgctttgagtattttgcaagcatat |
129 |
Q |
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|||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
4927808 |
ttaagctcgtccagagaaaactcatggcatagctcatttataaatgttgaacattgtttcttggacgaacttctacgctttgagtattttgcaagcatat |
4927709 |
T |
|
| Q |
130 |
ttcccacacgaattccgcttgatagccaatgataaccaagggaggtacnnnnnnntcaagcctacatttcatcataaaacatg----------------- |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
4927708 |
ttcccacacgaattccgcttgatagccaatgataaccaagggaagtacaaaaaaatcaagcctacatttcatcataaaacatgaatgcctcttagaaaat |
4927609 |
T |
|
| Q |
213 |
-----aaaagaagcaaaacgacggaaacacgttggg-aaaaaatgacatcatgggtaaaatgtaagtatcaaaccattttctaagctaaaactgattct |
305 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4927608 |
gaactaaaagaagcaaaacgacggaaacacgttgggaaaaaaatgacatcatgggtaaaatgtaagtatcaaaccattttctaagctaaaactgattct |
4927510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 4908402 - 4908508
Alignment:
| Q |
30 |
ttaagctcgtccagagaaaattgatggcatagctcttttataaatgttgaacattgtttcttggacgaacttttatgctttgagtattttgcaagcatat |
129 |
Q |
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||||| || ||||||||||||||||||||| |||||| ||||| |||| | ||||||||||||| | ||||||| ||||||| |||||| ||||||||| |
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| T |
4908402 |
ttaagatcatccagagaaaattgatggcatcgctcttctataacagttggatattgtttcttggaaggacttttacgctttgaatattttacaagcatat |
4908501 |
T |
|
| Q |
130 |
ttcccac |
136 |
Q |
| |
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||||||| |
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| T |
4908502 |
ttcccac |
4908508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 4904490 - 4904586
Alignment:
| Q |
42 |
agagaaaattgatggcatagctcttttataaatgttgaacat---tgtttcttggacgaacttttatgctttgagtattttgcaagcatatttccca |
135 |
Q |
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|||||||||||||||||||| ||||||||| |||||| |||| || ||| |||| ||||||||||| |||||||||||| || |||||||||||| |
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| T |
4904490 |
agagaaaattgatggcatagttcttttatagatgttggacattgctgcttcctggatgaacttttatggtttgagtattttacaggcatatttccca |
4904586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 5821839 - 5821747
Alignment:
| Q |
42 |
agagaaaattgatggcatagctcttttataaatgttgaacattgtttcttggacgaacttttatgctttgagtattttgcaagcatatttccc |
134 |
Q |
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|||||||||||||| |||||||||| ||||| ||||| ||||| ||| ||||| ||||||| |||||| || |||||| ||| ||| |||||| |
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| T |
5821839 |
agagaaaattgatgacatagctcttctataactgttggacattttttattggatgaactttcatgcttcgaatattttacaaacatctttccc |
5821747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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