View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_12 (Length: 343)
Name: NF0866_low_12
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 30 - 332
Target Start/End: Complemental strand, 33737123 - 33736821
Alignment:
| Q |
30 |
caacagtgatggagaaaattgatttcttcattatgaaatctcttgcttttgattgacctagaagtttgtcaatttgttttcttgttatggtgaagtaatc |
129 |
Q |
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| T |
33737123 |
caacagtgatggagaaaattgatttcttcattatgaaatctcttgcttttgattgacctagaagtttgtcaatttgttttcttgttatggtgaagtaatc |
33737024 |
T |
|
| Q |
130 |
tatttgaatatccattcctatcctattcacctgaaacatgtaatataatccaatacatgtcatggaacaaataaatttttcattttacataatgaatgag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33737023 |
tatttgaatatccattcctatcctattcacctgaaacatgtaatataatccaatacatgtcatggaacaaataaatttttcattttacataatgaatgag |
33736924 |
T |
|
| Q |
230 |
taagaaatagtaacannnnnnntttgaaatactaacaaatattcttccagttgcattcagaattcctcctcctcctgaagcataattaactccatagagt |
329 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33736923 |
taagaaatagtaacagggggggtttgaaatactaacaaatattcttccagttgcattcagaattcctcctcctcctgaagcataattaactccatagagt |
33736824 |
T |
|
| Q |
330 |
att |
332 |
Q |
| |
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||| |
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| T |
33736823 |
att |
33736821 |
T |
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