View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0866_low_21 (Length: 319)
Name: NF0866_low_21
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_21 |
 | |
|
| [»] scaffold0707 (1 HSPs) |
| | |
|
| [»] scaffold0308 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 9669057 - 9669306
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9669057 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacgagatcaaatttggcatcaagaggcatcttacagt |
9669156 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9669157 |
tagacactgctctttgtgtcacagggtgtggttcgattgaaacatcagatcatttatttctatcatgcccgttttttgcggatttatgggagcaattgcg |
9669256 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9669257 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
9669306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 10597805 - 10597557
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10597805 |
catcatcaggttcctttgaaggtgtcgatatttgcttggcgtcttatgagggatcaattatcgacgagatcaaatttggcatcaagaggcatctt-cagt |
10597707 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10597706 |
tagacacggctctctgtgtcacagggtgtggttcaattgaaacatcagatcatttatttctatcttgcccgttttttgcggatttatgggagcaattgcg |
10597607 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10597606 |
gctctggataggctgtgtgggggtcgactccaacattatttctaatcact |
10597557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 11234515 - 11234764
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||||||||||| || ||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
11234515 |
catcatcaggttcctttgaaggtgacaatatttgcttggcgtctcattagggatcggttatcgacgagatcaaatttggcagcaagaggtatcttacagt |
11234614 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |
|
|
| T |
11234615 |
tagacactgctctttgtgtcatagggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcagatttatgggagcaactacg |
11234714 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
11234715 |
actctggataggttttgtgggggtcgactccaacattatttctaatcact |
11234764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 32243743 - 32243902
Alignment:
| Q |
112 |
atcttacagttagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatggg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||| |||| ||||| ||||||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
32243743 |
atcttacagttagacactgctctttgcgtgacagggtgtggtatgattaaaacaacagatcacttatttctttcatgcctgttttttgcggttttatggg |
32243842 |
T |
|
| Q |
212 |
agcaattgcggctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
32243843 |
agcaggtgcggtgctggataggttgtgtgggggttgactccaacattatttctaatcact |
32243902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 49265015 - 49265264
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49265015 |
catcatcaggttcctttgaaggtgtcgatatttgcttggcgtcttatgagggatcggttatcgacgagatcaaatttggcatcaagaggcatcttacagt |
49265114 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49265115 |
tggacactgctctttgtgttacagggtgtggttcgattgaaacatcagatcatttatttctatcatgcccgttttttgcggatttatgggagcaattgcg |
49265214 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49265215 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
49265264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 20795757 - 20795508
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
20795757 |
catcatcaggttcctttgaaggtgtcgatatttgcttggcgtcttatgagggatcggttatcgatgaaatcaaatttggcatcaagaggcatcttacagt |
20795658 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
20795657 |
tagacactgctctttgtgtcacagggtgtggttcgattgaaacatcagatcatttatttctatcatgcccgttttttgcgggtttatgggagcaattgtg |
20795558 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20795557 |
gctctggataggttgtgtgggggtcgactccaacattatttctaatcact |
20795508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 39430367 - 39430118
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
39430367 |
catcatcaggttcctttgaaggtgtcgatatttgcttggcgtcttatgagggaccggttatcgacgagatcaaatttggcatgaagaggcatcttacagt |
39430268 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |
|
|
| T |
39430267 |
tagacactgctctttgtgtcatggggtgtggttcgattgaaacatcagatcatttatttctatcatgcccgttttttgcggagttatgggagcaattacg |
39430168 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39430167 |
gctctggataggctgtgtgggggtcgactccaacattatttctaatcact |
39430118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 17827391 - 17827141
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
|||||| | |||||||| ||||| |||| |||||||||||||| || ||||||| |||| |||| ||| ||||||||||| |||||||||||||||| | |
|
|
| T |
17827391 |
catcattaagttcctttaaaggtaacgatctttgcttggcgtctcattagggatcagttaccgacgagagcaaatttggcagcaagaggcatcttacaat |
17827292 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgtt-ttttgcggatttatgggagcaattgc |
220 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||||| | |||||||||||||||||||||||||||| |||||| || |||||||||||| ||| |
|
|
| T |
17827291 |
tagacactgctctttgtgtgacagggtgtggtttgattgaaatagcagatcatttatttctttcatgcccgtttttttgcagagttatgggagcaagtgc |
17827192 |
T |
|
| Q |
221 |
ggctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17827191 |
ggctctagataggttgtgtgggggtcgactccaacattatttctaatcact |
17827141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 41503087 - 41503200
Alignment:
| Q |
158 |
ttgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcggctctggataggttgtgtgggggtcgactccaacat |
257 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| |||||||| |||||||||||| |||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
41503087 |
ttgaaacagcagatcatctatttctttcatgcccgtcttttgcggttttatgggagcaggtgcgacactggataggttgtgtgggggttgactccaacat |
41503186 |
T |
|
| Q |
258 |
tatttctcatcact |
271 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
41503187 |
tatttctgatcact |
41503200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 16873543 - 16873623
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggca |
102 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||| | ||| | ||||||||||| | |||| | ||||||||||| |
|
|
| T |
16873543 |
catcatcaggtccccttgaaggtctcgatttttgcttggagacttcttcgggatcggttacccacaaaagcaaatttggca |
16873623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 2491295 - 2491242
Alignment:
| Q |
28 |
caggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggtta |
81 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| | ||||||| |||||| |
|
|
| T |
2491295 |
caggtacctttgaaggtgtctatttttgcttggcgtttgctgagggaccggtta |
2491242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 47105661 - 47105910
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47105661 |
catcatcaggttcctttgaaggtgtcgatatttgcttggcgtcttatgagggatcggttatcgacgagatcaaatttggcatcaagaggcatcttacagt |
47105760 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47105761 |
tagacactgctctttgtgtcacagggtgtggttcgattgaaacatcagatcatttatttctatcatgcccgttttttgcggagttatgggagcaattgcg |
47105860 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47105861 |
gctctggataggctgtgtgggggtcgactccaacattatttctaatcact |
47105910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 13554229 - 13554476
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
13554229 |
catcatcaggttcctttgaaggtgtcgatatttgcttggcgtcttataagggatcggttatcgacgagatcaaatttagcatcaagaggcatcttacagt |
13554328 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13554329 |
tagacactgctctttgtgtcacagggtgtggttcgattgaaacatcagatcatttatttctatcatgcccgttttttgcggatttatgggagcaattgcg |
13554428 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13554429 |
gctctggataggttgtgtgggggtcgactccaacattatttctaatca |
13554476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 31025564 - 31025802
Alignment:
| Q |
33 |
tcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagttagacactgct |
132 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| || ||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
31025564 |
tcctttgaaggtgacgatatttgcttggcgtctcattagggatcggttattgacgagatcaaatttggcagcaagaggtatcttacagttagacactgct |
31025663 |
T |
|
| Q |
133 |
ctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcggctctggatag |
232 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31025664 |
ctttgtgtcacagggtgcggttcgattgaaacatcatatcatttatttctttcatgcccgttttttgcggatttatgggagcaactgcggctctggatag |
31025763 |
T |
|
| Q |
233 |
gttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
31025764 |
gttgtgtgggggttgactccaacattatttctaatcact |
31025802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 19728576 - 19728327
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
|||||||| |||||||||||| | || || || ||||||||||| || |||||||||||| |||| ||| |||||||||| || | || |||||||||| |
|
|
| T |
19728576 |
catcatcatgttcctttgaagatttcaatcttcgcttggcgtctcattagggatcggttaccgacgagagaaaatttggcagcacgtggtatcttacagt |
19728477 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||| ||| ||||| || ||||||||| |||||| ||| ||||||| ||||||||||||||||| | |||||||| ||| ||| |||| |||| |
|
|
| T |
19728476 |
tagacacggcttggtgtgtggcagggtgtggtttgattgagacagcagatcacttatttctttcatgcccatcttttgcggttttgtggaagcaggtgcg |
19728377 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|| ||||||||||||| ||||| |||||||||| ||||| |||||||| |
|
|
| T |
19728376 |
gcaatggataggttgtgctggggttgactccaacactatttatcatcact |
19728327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 41339616 - 41339574
Alignment:
| Q |
20 |
gacatcatcaggttcctttgaaggtgtcgatttttgcttggcg |
62 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
41339616 |
gacatcatcaggttcctttgaaggtatcggtttttgcttggcg |
41339574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 43021803 - 43021855
Alignment:
| Q |
204 |
tttatgggagcaattgcggctctggataggttgtgtgggggtcgactccaaca |
256 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
43021803 |
tttatgggagcaggtgcggcactggataggttgtgttggggttgactccaaca |
43021855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 43253776 - 43254026
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
43253776 |
catcatcaggttcctttgaaggtggcgatatttgcttggcgtctcattagggatcggttatcgacgagatcaaatttggcaacaagaggtatcttacagt |
43253875 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43253876 |
tagacactgctctttgtgtcacaaggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaactgcg |
43253975 |
T |
|
| Q |
222 |
gctctggataggttgtgt-gggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
43253976 |
gctctggataggttgtgtggggggttgactccaacattatttctaatcact |
43254026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 24793840 - 24793591
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||| | || || || ||||||||||| || |||||||||||| |||| ||| ||||||||||| || | || |||||||||| |
|
|
| T |
24793840 |
catcatcaggttcctttgaagatttcaatcttcgcttggcgtctcattagggatcggttaccgacgagagcaaatttggcagcatgtggtatcttacagt |
24793741 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||| | ||||| || |||||||| |||||| ||| ||||||| ||||||||||| |||| || |||||||| |||||||||||| |||| |
|
|
| T |
24793740 |
tagacactgctttgtgtgtggcagggtgtggtatgattgagacagcagatcacttatttctttcttgcctgtcttttgcggttttatgggagcaggtgcg |
24793641 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
24793640 |
gcactggataggttgtgttggggttgactccaacactatttctcatcact |
24793591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 11394398 - 11394646
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||| | || || || ||||||||||| || |||||| ||||| |||| ||| ||||||||||| || | || |||||||||| |
|
|
| T |
11394398 |
catcatcaggttcctttgaagat-tcaatcttcgcttggcgtctcattagggattggttaccgacgagagcaaatttggcagcacgtggtatcttacagt |
11394496 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||| ||| ||||||| ||||||||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
11394497 |
tagacactgcttggtgtgtggcagggtgtggtatgattgagacagcagatcacttatttctttcatgcccgtcttttgcggttttatgggagcaggtgcg |
11394596 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|| ||||||||||||||| ||||| | || ||||| |||||||||||||| |
|
|
| T |
11394597 |
gcactggataggttgtgttggggttgtctacaacactatttctcatcact |
11394646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 6900984 - 6900944
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcg |
62 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
6900984 |
catcatcaggttcctctaaaggtatcgatttttgcttggcg |
6900944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 20198144 - 20198395
Alignment:
| Q |
20 |
gacatcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttaca |
119 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||| | |||||||| || ||||||||||||||||| |||||||||| |||| ||||||| |||||| | |
|
|
| T |
20198144 |
gacatcatcaagttcctttgaaggtgacgatattttcgtggcgtctcattagggatcggttatcgacgagatcaaattaggcagcaagaggtatcttaaa |
20198243 |
T |
|
| Q |
120 |
gttagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattg |
219 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20198244 |
gttagacactgctctttctgtcacaaggtgtggttcgattgaaacatcagatcatttatttctttcatgcctgttttttgcggatttatgggagcaattg |
20198343 |
T |
|
| Q |
220 |
cggctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20198344 |
cggctctggataggttgtgtgggggtcgactccaacattatttctaatcact |
20198395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 53945964 - 53946200
Alignment:
| Q |
36 |
tttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagttagacactgctctt |
135 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || |||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
53945964 |
tttgaaggtgacgatatttgcttggcgtctcattagggatcgattatcgacgagatcaaatttggcagcaagaggtatcttacagttagacactgctctt |
53946063 |
T |
|
| Q |
136 |
tgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccg-ttttttgcggatttatgggagcaattgcggctctggataggt |
234 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||| |
|
|
| T |
53946064 |
tgtgtcacagtgtgtggttcgattgaaacatcagatcatttatttctttcatgcccgtttttttgcggaattatgggagcaactgcgtctctggataggt |
53946163 |
T |
|
| Q |
235 |
tgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53946164 |
tgtgtgggggtcgactccaacattatttctaatcact |
53946200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 10867789 - 10867540
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| || |||||||||||| |||| ||| |||||||| || |||||||||||||||||| |
|
|
| T |
10867789 |
catcatcaggttcctttgaaggtgacgatctttgcttggcgtctcatcagggatcggttaccgacgagagcaaatttgacagcaagaggcatcttacagt |
10867690 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
|| ||| |||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||||| | ||||||||||| |||| |
|
|
| T |
10867689 |
taaacaatgctctttgtgtgacaaggtgtggtatgattgaaacagcagatcatttatttctttcatgtccgttttttgctattctatgggagcaagtgcg |
10867590 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10867589 |
gctctggtcaggttgtgtgggggtcgactccaacattatttctaatcact |
10867540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 14867836 - 14868085
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||| | || || | ||||||||||| || |||||||||||| |||| ||| ||||||||||| || | || |||||||||| |
|
|
| T |
14867836 |
catcatcaggttcctttgaagatttcaatctccgcttggcgtctcattagggatcggttaccgacgagagcaaatttggcagcacgtggtatcttacagt |
14867935 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||| ||| ||||| || |||||||| |||||| ||| ||||||| ||||||||||||||||| |||||| ||| |||||||||||| |||| |
|
|
| T |
14867936 |
tagacacggcttggtgtgtggcagggtgtggtatgattgagacagcagatcacttatttctttcatgccctttttttacggttttatgggagcaggtgcg |
14868035 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|| |||| ||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
14868036 |
gcactggttaggttgtgctggggttgactccaacactatttctcatcact |
14868085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 13085620 - 13085386
Alignment:
| Q |
30 |
ggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagttagacact |
129 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||| || ||||||||||||||||| ||||||||||||||| | ||||| ||||||||||| |||| | |
|
|
| T |
13085620 |
ggttcctttgaaggtgttgatatttgcttgacgtctcattagggatcggttatcgactagatcaaatttggcagctagaggtatcttacagttcgacaat |
13085521 |
T |
|
| Q |
130 |
gctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcggctctgga |
229 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||| |
|
|
| T |
13085520 |
gctctttgtgtcacagggtgtggttcggttgaaacttcagatcatttatttctttcatgcccgttttttgcaaagttatgggagcatttgcgtctctgga |
13085421 |
T |
|
| Q |
230 |
taggttgtgtgggggtcgactccaacattatttct |
264 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
13085420 |
ttggttgtgtgggggtcgactccaacagtatttct |
13085386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 33572397 - 33572500
Alignment:
| Q |
168 |
agatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcggctctggataggttgtgtgggggtcgactccaacattatttctcat |
267 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||||| |||||||||||| || ||| ||||||||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
33572397 |
agatcacttatttctttgatgctcgttttttgcggttttatgggagcaggtgtggcactggataggttgtgtgggggttgacttcaacattatttctaat |
33572496 |
T |
|
| Q |
268 |
cact |
271 |
Q |
| |
|
|||| |
|
|
| T |
33572497 |
cact |
33572500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 33804870 - 33804790
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggca |
102 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||| | ||| | ||||||||||| | |||||| ||||||||||| |
|
|
| T |
33804870 |
catcatcaggttcccttgaaggtctcaatttttgcttggagacttcttcgggatcggttacctacaagagcaaatttggca |
33804790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 9565456 - 9565401
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcg |
77 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
9565456 |
catcctcaggttcctttgaaggtatcgatttttgcgtggcggcttattcgggatcg |
9565401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 4474787 - 4474747
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcg |
62 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
4474787 |
catcatcaggttccgttgaaggtatcaatttttgcttggcg |
4474747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 9992889 - 9993138
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||||||||||||| || ||||||||| || |||| ||| ||||||||||| || | || |||||||||| |
|
|
| T |
9992889 |
catcattaggttcctttgaaggtatcgatctttgcttggcgtctcattagggatcggctaccgacgagagcaaatttggcagcacgtggtatcttacagt |
9992988 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||| |||||||||||| || | | |||||||| |||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
9992989 |
tagtcactgctctttgcgtgaaagggtgtggtatgattgaaacaacagatcacttatttctttcatgcccgttttttgcggttttatgggagcaagtgcg |
9993088 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|| |||||||||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
9993089 |
gcgctggataggttgtgtgggagttgactccaacattatttctaatcact |
9993138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 42953545 - 42953793
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||| | ||||| || ||||||||||| || |||||||||||| |||| ||| ||||||||||| || | || |||||||||| |
|
|
| T |
42953545 |
catcatcaggttcctttgaagatttcgatcttcgcttggcgtctcattagggatcggttaccgacgagagcaaatttggcagcacgtggtatcttacagt |
42953644 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||| | ||||| || |||||||| |||||| ||| || |||| ||||||||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
42953645 |
tagacactgctatgtgtgtggcagggtgtggtatgattgagacaacatatcacttatttctttcatgcccgtcttttgcggttttatgggagcaggtgcg |
42953744 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
| ||||||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
42953745 |
g-actggataggttgtgttggggttgactccaacactatttctcatcact |
42953793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 112 - 271
Target Start/End: Complemental strand, 10353947 - 10353788
Alignment:
| Q |
112 |
atcttacagttagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatggg |
211 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||| |||||| || |
|
|
| T |
10353947 |
atcttacggttagacaatgctctttgtgtcacagggtgtagttcgattgaaacttcagatcatttatttttttcatgtccgttttttgcgaatttatagg |
10353848 |
T |
|
| Q |
212 |
agcaattgcggctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
10353847 |
agcaattgcgtctctggataggttgtgtgggggtcgactccaacagtatttctaatcact |
10353788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 4524864 - 4524927
Alignment:
| Q |
208 |
tgggagcaattgcggctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||| || ||||||| ||||||| |||||| |
|
|
| T |
4524864 |
tgggagcatgtgcggctatggattggttgtgtgggggttgattccaacaatatttctaatcact |
4524927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 4524676 - 4524713
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttg |
59 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
4524676 |
catcaacaggttcctttgaaggtgtcgatctttgcttg |
4524713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 4399966 - 4399717
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||| | | ||| ||||||||| |||| || |||||||||||| |||| ||| ||||||||||| || || |||||||||| |
|
|
| T |
4399966 |
catcatcaggttcctttgaagatattgatctttgcttggagtctcattagggatcggttaccgacgagagcaaatttggcagcacatggtatcttacagt |
4399867 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||||| ||||| || | |||||| |||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
4399866 |
tagacactgctctgtgtgtggcaggttgtggtatgattgaaacaacagatcacttatttctttcatgcccgtcttttgcggtattatgggagcaggtgcg |
4399767 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4399766 |
gcaatggataggttgtgtgggggttgactccaacattatttctcatcact |
4399717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 13917385 - 13917173
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||||||||||||| || |||||| || || | || ||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
13917385 |
catcatcaggttcctttgaatgtgacgatctttgcttggcgtctcattagggattggctaccaacgagagcaaatttggcagcaagaggtatcttacagt |
13917286 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||||||| | ||||||| ||||||||||||||||| ||||| ||| ||||||||||||| |||| |
|
|
| T |
13917285 |
tagacactgctctttgtgtgacagggtgtggtatgattgaaagagcagatcaattatttctttcatgcccatttttcgcgattttatgggagcaagtgcg |
13917186 |
T |
|
| Q |
222 |
gctctggataggt |
234 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
13917185 |
gctttggataggt |
13917173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 19513516 - 19513765
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggcatcaagaggcatcttacagt |
121 |
Q |
| |
|
||||||||||||||||||||| | || || || ||||||||||| || |||||||||||| |||| ||| ||||||||||| || | || |||||||||| |
|
|
| T |
19513516 |
catcatcaggttcctttgaagatttcaatcttggcttggcgtctcattagggatcggttaccgacgagagcaaatttggcagcacgtggtatcttacagt |
19513615 |
T |
|
| Q |
122 |
tagacactgctctttgtgtcacatggtgtggttcgattgaaacatcagatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcg |
221 |
Q |
| |
|
||||||||||| | ||||| || |||||||| |||||| ||| ||||||| ||||||||||| || ||| ||||| || |||||||||||| |||| |
|
|
| T |
19513616 |
tagacactgctttgtgtgtggcagggtgtggtatgattgagacagcagatcacttatttctttcttgtccgccttttgtggttttatgggagcaggtgcg |
19513715 |
T |
|
| Q |
222 |
gctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
19513716 |
gcactggataggttgtgttggggttgactccaacactatttctcatcact |
19513765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 13917166 - 13917113
Alignment:
| Q |
218 |
tgcggctctggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
13917166 |
tgcggctatggataggttgtgtgggggtcaactccaacattatttctaatcact |
13917113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 17738041 - 17737996
Alignment:
| Q |
226 |
tggataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
17738041 |
tggataggttgtgtcggggttgactccaacactatttctcatcact |
17737996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 35122757 - 35122837
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggca |
102 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||| | ||| | ||||||||||| | |||| | ||||||||||| |
|
|
| T |
35122757 |
catcatcaggtccccttgaaggtctcgatttttgcttggagacttcttcgggatcggttacccacaaaagcaaatttggca |
35122837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 8571812 - 8571770
Alignment:
| Q |
229 |
ataggttgtgtgggggtcgactccaacattatttctcatcact |
271 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
8571812 |
ataggttgtgtcggggttgactccaacactatttctcatcact |
8571770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 3168574 - 3168622
Alignment:
| Q |
20 |
gacatcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttat |
68 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
3168574 |
gacatcctcaggttcctttgaaggtttcaatttttgcgtggcggcttat |
3168622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 1395 - 1292
Alignment:
| Q |
168 |
agatcatttatttctttcatgcccgttttttgcggatttatgggagcaattgcggctctggataggttgtgtgggggtcgactccaacattatttctcat |
267 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||||| |||||||||||| || ||| ||||||||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
1395 |
agatcacttatttctttgatgctcgttttttgcggttttatgggagcaggtgtggcactggataggttgtgtgggggttgacttcaacattatttctaat |
1296 |
T |
|
| Q |
268 |
cact |
271 |
Q |
| |
|
|||| |
|
|
| T |
1295 |
cact |
1292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 17235 - 17155
Alignment:
| Q |
22 |
catcatcaggttcctttgaaggtgtcgatttttgcttggcgtcttatgagggatcggttatcgacaagatcaaatttggca |
102 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||| | ||| | ||||||| ||| | |||| | ||||||||||| |
|
|
| T |
17235 |
catcatcaggtccccttgaaggtctcgatttttgcttggagacttcttcgggatcgtttacctacaaaagcaaatttggca |
17155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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