View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_23 (Length: 314)
Name: NF0866_low_23
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 80 - 314
Target Start/End: Complemental strand, 33915688 - 33915451
Alignment:
| Q |
80 |
ttgctctcaactactaggagacatcttggaaagatagatcttgagtcaaatggattttagtttcaatcttgtttcatgaaactgtgttg---ccatcctt |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
33915688 |
ttgctctcaactactaggagacatcttggaaagatagatcttgagtcaaatggcttttagtttcaatcttgtatcatgaaactgtgttgatgccatcctt |
33915589 |
T |
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| Q |
177 |
aattttgctaaaatctcgttaatcattatcattaatggaaaagctacaattttatttcattgcactaggggagtattctaagctgatcccttatctccac |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33915588 |
aattttgctaaaatctcgttaatcattatcattaatggaaaagctacaattttatttcattgcactaagggagtattctaagctgatcccttatctccac |
33915489 |
T |
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| Q |
277 |
ttttattttgcataatcgaggaagttgtgagcacaagc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33915488 |
ttttattttgcataatcgaggaagttgtgagcacaagc |
33915451 |
T |
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