View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_25 (Length: 311)
Name: NF0866_low_25
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_25 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 88 - 311
Target Start/End: Complemental strand, 23147490 - 23147264
Alignment:
| Q |
88 |
attcatggccttcacaatcacaaccacctccattgttggaggaagagtaactattaggagcaaatttacctaattatttcgaacaaagttttgaacttaa |
187 |
Q |
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| T |
23147490 |
attcatggccttaacaatcacaaccgcctccattgttggaggaagagtaactattaggggcaaatttatctaattatatggaacaaagttatgaatttaa |
23147391 |
T |
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| Q |
188 |
tttaggcatcaagcttctctagaattttaattagatacctcttatcaatatttttcacgtta---attaacaaatgaaaataagaacaggttgggtattt |
284 |
Q |
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| T |
23147390 |
tttaggcatcaagcttctctcgaattttaattagatacctcatatcaatatttttcacgttaattattaacaaatgaaaataagaacacgttgggtattt |
23147291 |
T |
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| Q |
285 |
catacatcaaacacaatgcatttagag |
311 |
Q |
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| T |
23147290 |
catacatcaaacacaatgcatttagag |
23147264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 88 - 311
Target Start/End: Original strand, 30033759 - 30033973
Alignment:
| Q |
88 |
attcatggccttcacaatcacaaccacctccattgttggaggaagagtaactattaggagcaaatttacctaattatttcgaacaaagttttgaacttaa |
187 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||| |||| |
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| T |
30033759 |
attcatgaccttcacaatcacaaccacctccattgttggaggaagagtaactattaggagcaaatttatctaattatttggaacaaagttctgaatttaa |
30033858 |
T |
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| Q |
188 |
tttaggcatcaagcttctctagaattttaattagatacctcttatcaatatttttcacgttaattaacaaatgaaaataagaacaggttgggtatttcat |
287 |
Q |
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| T |
30033859 |
tttaggcatcaagcttctctcgaattttaattagatacctcctatcaata-ttttcacgttaattaacaaatgaaaataagaa--------gtatttcat |
30033949 |
T |
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| Q |
288 |
acatcaaacacaatgcatttagag |
311 |
Q |
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| T |
30033950 |
acatcaaacacaatgcatttagag |
30033973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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