View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0866_low_28 (Length: 283)

Name: NF0866_low_28
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0866_low_28
NF0866_low_28
[»] chr2 (2 HSPs)
chr2 (20-191)||(20922468-20922645)
chr2 (189-238)||(20922658-20922710)
[»] chr4 (1 HSPs)
chr4 (20-191)||(32594270-32594447)
[»] chr7 (2 HSPs)
chr7 (20-141)||(19106035-19106161)
chr7 (189-238)||(19105933-19105985)
[»] chr8 (1 HSPs)
chr8 (20-141)||(2349957-2350088)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 20922468 - 20922645
Alignment:
Q  20 gacatcatcagtaaaggaagaagtatgtgctgccactcaaatattaaacatctaaattggagtttagtattgacaatat------taggttctatcttct 113  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      |||||||||||||||    
T  20922468 gacatcataagtaaaggaagaagtatgtgctgccactcaaatattaaacatcgaaattggagtttagtattgacaatatcagatataggttctatcttct 20922567  T
Q  114 atgtaacaaaattatcatctataaaatgaattgataaaatggagaaagaaaccaaacactattcaactacctgtgtaa 191  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||    
T  20922568 atgtaacaaaattatcatctataaaatgaatcgataaaatggagaaagaaacctaacactattcaacttcctgtgtaa 20922645  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 20922658 - 20922710
Alignment:
Q  189 taattgttcctgtgcttcgtgatacatgggtt---tcatacacagaccacaca 238  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||||||||    
T  20922658 taattgttcctatgcttcgtgatacatgggtttcatcatacacagaccacaca 20922710  T

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Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 32594447 - 32594270
Alignment:
Q  20 gacatcatcagtaaaggaagaagtatgtgctgccactcaaatattaaacatctaaattggagtttagtattgacaatat------taggttctatcttct 113  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||    
T  32594447 gacatcataagtaaaggaagaagtatgtgctgccgctcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttct 32594348  T
Q  114 atgtaacaaaattatcatctataaaatgaattgataaaatggagaaagaaaccaaacactattcaactacctgtgtaa 191  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||||||||    
T  32594347 atgtaacaaaattatcatctataaaatgaatcgataaaatggagaaagaaacctaacacaattcaacttcctgtgtaa 32594270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 19106161 - 19106035
Alignment:
Q  20 gacatcatcagtaaaggaagaagtatgtgctgccactcaaatattaaacatctaaattggagtttagtattgacaatat------taggttctatcttct 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||      |||||| ||||||||    
T  19106161 gacatcataagtaaaggaagaagtatgtgctgccactcaaatattaaacatct-aattggagtttagtattgacaatatcagatataggttatatcttct 19106063  T
Q  114 atgtaacaaaattatcatctataaaatg 141  Q
    ||||||||||||||||||||||||||||    
T  19106062 atgtaacaaaattatcatctataaaatg 19106035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 19105985 - 19105933
Alignment:
Q  189 taattgttcctgtgcttcgtgatacatgggtt---tcatacacagaccacaca 238  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||||||||    
T  19105985 taattgttcctatgcttcgtgatacatgggtttcatcatacacagaccacaca 19105933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 2350088 - 2349957
Alignment:
Q  20 gacatcatcagtaaaggaagaagtatgtgctgccactcaaatattaaacatctaaattggagtttagtattgacaatat------taggttctatcttc- 112  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||     
T  2350088 gacatcataagtaaaggaagaagtatgtgctgccgctcaaatattaaacatctaaattggagtttagtattgacaatatcagatataggttctatcttct 2349989  T
Q  113 ---tatgtaacaaaattatcatctataaaatg 141  Q
       |||||||||||||||||||||||||||||    
T  2349988 atatatgtaacaaaattatcatctataaaatg 2349957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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