View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_33 (Length: 273)
Name: NF0866_low_33
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 722384 - 722518
Alignment:
| Q |
39 |
ctgcaaagatccaaaacttgttacagcagatgatttcttttactcagtaaaagaaggagttgtatcgagtccagttggttctcaagtgacattagtgaca |
138 |
Q |
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| T |
722384 |
ctgcaaagatccaaaacttgttacagcagatgatttctttttctcagtaaaagaaggagttgtatcgagtccagttggtactcaagtgacattagtcaca |
722483 |
T |
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| Q |
139 |
gttaatgagatattaggattaaacactcttggtgt |
173 |
Q |
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| T |
722484 |
gttaatgagatattaggattaaacactcttggtgt |
722518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 716506 - 716635
Alignment:
| Q |
42 |
caaagatccaaaacttgttacagcagatgatttcttttactcagtaaaagaaggagttgtatcgagtccagttggttctcaagtgacattagtgacagtt |
141 |
Q |
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| T |
716506 |
caaagaaccaaaacttgttacaccagatgatttctttttctcaataaaagaagaaaacatatcaagtcaacttggttcgcaagtgacactacccacagtt |
716605 |
T |
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| Q |
142 |
aatgagatattaggattaaacactcttggt |
171 |
Q |
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| T |
716606 |
agtgagatattaggattaaatactcttggt |
716635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 718096 - 718038
Alignment:
| Q |
38 |
tctgcaaagatccaaaacttgttacagcagatgatttcttttactcagtaaaagaagga |
96 |
Q |
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| T |
718096 |
tctgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtaaaagaagga |
718038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 702792 - 702736
Alignment:
| Q |
40 |
tgcaaagatccaaaacttgttacagcagatgatttcttttactcagtaaaagaagga |
96 |
Q |
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| T |
702792 |
tgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtaaaagaagga |
702736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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