View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0866_low_34 (Length: 271)

Name: NF0866_low_34
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0866_low_34
NF0866_low_34
[»] chr3 (10 HSPs)
chr3 (49-236)||(4878722-4878888)
chr3 (49-236)||(4856987-4857153)
chr3 (89-236)||(4861939-4862086)
chr3 (89-180)||(4872196-4872288)
chr3 (89-185)||(4848832-4848929)
chr3 (91-231)||(4835692-4835831)
chr3 (49-90)||(4872005-4872046)
chr3 (134-194)||(44810963-44811023)
chr3 (103-150)||(4837749-4837796)
chr3 (49-87)||(4848644-4848682)
[»] chr4 (1 HSPs)
chr4 (130-161)||(44184077-44184108)
[»] chr1 (1 HSPs)
chr1 (104-195)||(51449508-51449599)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 4878722 - 4878888
Alignment:
Q  49 tgtttaccaattgcacttactaattcttaattatagaatgatgattaaaaaatgtatgtttcataactgttttttcatcacaagtttatagcttatttta 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||                  
T  4878722 tgtttaccaattgcacttactaattcttaattatagaatgatgattaaaaattgtatgtttcataactg-tttttcatcacaagtt-------------- 4878806  T
Q  149 ttagtttatagctcatttcttagatgttattccaaataacgtttgagattataggttatcattttaatttcatgtttacctttattat 236  Q
          ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4878807 ------tatagttcatttctcagacgttattccaaataacgtttgagattataggttatcattttaatttcatgtttacctttattat 4878888  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 4856987 - 4857153
Alignment:
Q  49 tgtttaccaattgcacttactaattcttaattatagaatgatgattaaaaaatgtatgtttcataactgttttttcatcacaagtttatagcttatttta 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||                  
T  4856987 tgtttaccaattgcacttactaattcttaattatagaatgatgattaaaaattgtatgtttcataactg-tttttcatcacaagtt-------------- 4857071  T
Q  149 ttagtttatagctcatttcttagatgttattccaaataacgtttgagattataggttatcattttaatttcatgtttacctttattat 236  Q
          ||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4857072 ------tatagttcacttctcagacgttattccaaataacgtttgagattataggttatcattttaatttcatgtttacctttattat 4857153  T

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Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 4861939 - 4862086
Alignment:
Q  89 atgattaaaaaatgtatgtttcataactgttttttcatcacaagttt-atagcttattttattagtttatagctcatttcttagatgttattccaaataa 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||| |||| ||||| ||||||  ||||||    
T  4861939 atgattaaaaaatgtatgtttcataaccgttttttcatcacaagttttatagtttattttattagtttgtagcttattttttagacgttattttaaataa 4862038  T
Q  188 cgtttgagattataggttatcattttaatttcatgtttacctttattat 236  Q
    ||||||||||||||| |||||||||| ||||  ||||||||||||||||    
T  4862039 cgtttgagattatagtttatcatttttattt-gtgtttacctttattat 4862086  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 4872196 - 4872288
Alignment:
Q  89 atgattaaaaaatgtatgtttcataactgttttttcatcacaag-tttatagcttattttattagtttatagctcatttcttagatgttattc 180  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||| | |||| ||||| |||||||    
T  4872196 atgattaaaaaatgtatgtttcataactgttttttcatcactagttttatagtttattttattagtttgtagtttattttttagacgttattc 4872288  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 4848832 - 4848929
Alignment:
Q  89 atgattaaaaaatgtatgtttcataactgttttttcatcacaag-tttatagcttattttattagtttatagctcatttcttagatgttattccaaat 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |  ||| |||||  |||||||||||    
T  4848832 atgattaaaaaatatatgtttcataactgttttttcatcacaagttttatagtttattttattagtttgtaggtttttttttagactttattccaaat 4848929  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 4835692 - 4835831
Alignment:
Q  91 gattaaaaaatgtatgtttcataactgttttttcatcacaagtttatagcttattttattagtttatagctcatttcttagatgttattccaaataacgt 190  Q
    ||||||||| | ||||||||| || || ||||||||||||   |||||| ||||||||||| ||||||||| |||| ||||| |||||| ||||||  ||    
T  4835692 gattaaaaagtatatgtttcacaattgctttttcatcacagacttatag-ttattttattaatttatagcttattttttagaagttatttcaaatagtgt 4835790  T
Q  191 ttgagattataggttatcattttaatttcatgtttaccttt 231  Q
     |||| |||||  |||| ||||| |||||| | ||||||||    
T  4835791 atgagcttataatttattatttttatttcacgcttaccttt 4835831  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 4872005 - 4872046
Alignment:
Q  49 tgtttaccaattgcacttactaattcttaattatagaatgat 90  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  4872005 tgtttaccaattgcactcattaattcttaattatagaatgat 4872046  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 44811023 - 44810963
Alignment:
Q  134 ttatagcttattttattagtttatagctcatttcttagatgttattccaaataacgtttga 194  Q
    ||||| |||||||| |||||| |||| | |||| |||||||||||| ||||||||||||||    
T  44811023 ttataacttattttgttagttaatagtttattttttagatgttatttcaaataacgtttga 44810963  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 4837749 - 4837796
Alignment:
Q  103 tatgtttcataactgttttttcatcacaagtttatagcttattttatt 150  Q
    ||||||||| || || ||||||||||||||||||||| ||||||||||    
T  4837749 tatgtttcacaattgctttttcatcacaagtttatagtttattttatt 4837796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 4848644 - 4848682
Alignment:
Q  49 tgtttaccaattgcacttactaattcttaattatagaat 87  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  4848644 tgtttaccaattgcactcattaattcttaattatagaat 4848682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 161
Target Start/End: Original strand, 44184077 - 44184108
Alignment:
Q  130 aagtttatagcttattttattagtttatagct 161  Q
    ||||||||||||||||||||||||||||||||    
T  44184077 aagtttatagcttattttattagtttatagct 44184108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 51449508 - 51449599
Alignment:
Q  104 atgtttcataactgttttttcatcacaagtttatagcttattttattagtttatagctcatttcttagatgttattccaaataacgtttgag 195  Q
    |||||| ||||| || ||||||  || | ||||||  ||||| ||| |||||||| || |||| |||||||||||| |||||||||||||||    
T  51449508 atgtttgataacagtcttttcacaacgattttataatttattgtatgagtttatatcttattttttagatgttatttcaaataacgtttgag 51449599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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