View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_37 (Length: 265)
Name: NF0866_low_37
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_37 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 71 - 265
Target Start/End: Complemental strand, 37469964 - 37469771
Alignment:
| Q |
71 |
ttcagtttaacaccgtgtccaactgcaattgtaaaaggtgagaaaagattaccaagataaatcttaatatgattttgttttagaaaatgaaaatgaaaaa |
170 |
Q |
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| T |
37469964 |
ttcagtttaacactgtgtccaactgcaattgtaaaaggtgagaaaagattaccaagataaatcttaatatgattttgttt-agaaaatgaaaatgaaaaa |
37469866 |
T |
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| Q |
171 |
gggtgaatatacctcctccatcaataactctggaaaatccataatccaatgtcctgtggaaaactcctacatcatgtatctgaaattcaccaccg |
265 |
Q |
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| T |
37469865 |
gggtgaatatacctcctctgtcgataactctggaaaatccataatccaatgtcctgtggaaaactcctacatcatgtatctgaaattcaccaccg |
37469771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 37472086 - 37472040
Alignment:
| Q |
30 |
gaaataagtgcagaaacggaacacaaaaatgaatgacgtgtttcagt |
76 |
Q |
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| T |
37472086 |
gaaataagtgcagaaacggaacacaaaaatgaatgacgtgtttcagt |
37472040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 257
Target Start/End: Original strand, 40735877 - 40736034
Alignment:
| Q |
103 |
aaaaggtgagaaaagattaccaagataaatcttaatatgattttgttttagaaaatgaaaatgaaaaagggtga---atat-acctcctccatcaataac |
198 |
Q |
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| T |
40735877 |
aaaaggtgagaaaagattagcacgataaatcttaatatgattttg-tttagaaaatgaaaatgaatatgtcatagtcatataacctcctccttcgataac |
40735975 |
T |
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| Q |
199 |
tctggaaaatccataatccaatgtcctgtggaaaactcctacatcatgtatctgaaatt |
257 |
Q |
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| T |
40735976 |
tctgaaaactccgtaatccaatgtcctgtggaacactcctacatcaagtatctgaaatt |
40736034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 33003979 - 33004032
Alignment:
| Q |
194 |
ataactctggaaaatccataatccaatgtcctgtggaaaactcctacatcatgt |
247 |
Q |
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| T |
33003979 |
ataactctggaaagtccataatccaatgacctatagaatactcctacatcatgt |
33004032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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