View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_42 (Length: 251)
Name: NF0866_low_42
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_42 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 10218998 - 10218784
Alignment:
| Q |
33 |
atttaaaggcaacgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacggtctattgatatttcaataaaaagaataaaagtg |
132 |
Q |
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| T |
10218998 |
atttaaaggcaacgatacaatgataactgataataagttttgtaacaagaacaattggcacaaacgatctattgatatttcaataaaaagaataaaagtg |
10218899 |
T |
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| Q |
133 |
gccggctannnnnnnnnnnnatatggacaataaataccgaaattattaagtcagacgctatgatgaacatttgaacttcgactatttcatttg-gtatgt |
231 |
Q |
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| T |
10218898 |
gccggcta-----tttttttatatgaacaataaatgtcgaaattgttaagtcagacattatggtgagcattcgaacttcgactatttcatttgtgtatgt |
10218804 |
T |
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| Q |
232 |
gagtttttaacagtgttgtc |
251 |
Q |
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| T |
10218803 |
gagtttttaatagcgttgtc |
10218784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 11050971 - 11050852
Alignment:
| Q |
22 |
catcatcatgaatttaaaggcaa-cgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacggtctattgatatttcaataaaa |
120 |
Q |
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| T |
11050971 |
catcatcatgaattaaaagacaaaccatacaatggtaactggtaataagttttgtaacaagaacaattggcacaaagagtctattgatgtttcaataaaa |
11050872 |
T |
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| Q |
121 |
agaataaaagtggccggcta |
140 |
Q |
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| T |
11050871 |
agaataaaagtggccggcta |
11050852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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