View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_43 (Length: 251)
Name: NF0866_low_43
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 21548807 - 21549042
Alignment:
| Q |
10 |
aagaatataaactacctgattaaattgaaacttgaaacctttattttttccattaaatattgaaaccaataattgtagaaaatctcacacttatggcaaa |
109 |
Q |
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| T |
21548807 |
aagaaaataaattacctgattaaactgaaacttaaagcctttattttt-ccatta--tattgaaaccaaaaattgtagaaaatctcacacttatgacaaa |
21548903 |
T |
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| Q |
110 |
gaacaaaagtgaaacatcacaaaatagaacataaaatgtcaccattgtaagcaac-attttaacatgcaggagcgaataataactaaattcaaagatcta |
208 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21548904 |
gaataaaagtgaagcatcacaaaatagaacataaaatgtcaccattgtaagcaacaattttaacatgcaggagcgaataataactaaattcaaagatcta |
21549003 |
T |
|
| Q |
209 |
taatctgtcttgttttcctggactagatagaaagttgta |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
21549004 |
taatctgtcttgttttcctggactagatagaaagttgta |
21549042 |
T |
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