View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_45 (Length: 250)
Name: NF0866_low_45
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0866_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 811056 - 810810
Alignment:
| Q |
2 |
gaatctgttaacgatttcatctatattttagagattagatgctcttgcatatacctaaagcggccaaagtttaatatattaaaattttataaacgagagt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
811056 |
gaatctgttaacgatttcatctatattttagagattagatgctcttgcatatacctaaagcggccaaagtttaatatattaaaattttataaacgtgagt |
810957 |
T |
|
| Q |
102 |
gatgnnnnnnnnnnnnnnnnnngtatgattatcaagagattttacatgcactca-----ctgttcatgattgttttaaacagatgttcctagatcagcta |
196 |
Q |
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|||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
810956 |
gatgtttttttatttttgttttgtatgcttatcaagagattttacatatactcacacggctgttcatgattgttttaaacagatgttcctagatcagcta |
810857 |
T |
|
| Q |
197 |
ctcgcaaggctgcgaggaatatgcctacttatgtttacttcttttct |
243 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
810856 |
ctcgcaaggctgcaaggaatatgcctacttatgtttacttcttttct |
810810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 33723963 - 33723723
Alignment:
| Q |
2 |
gaatctgttaacgatttcatctatattttagagattagatgctcttgcatatacctaaagcggccaaagtttaatatattaaaattttataaacgagagt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| || |
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| T |
33723963 |
gaatctgttaacgatttcatctatattttagagattagatgctcttgcatacacctaaagcagtcaaagtttaatatattaaaattttataaacgagggt |
33723864 |
T |
|
| Q |
102 |
gatgnnnnnnnnnnnnnnnnnngtatgattatcaagagattttacatgcactcactgttcatgattgttttaaacagatgttcctagatcagctactcgc |
201 |
Q |
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|||| ||||| |||| |||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||||| |
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| T |
33723863 |
gatgttttttaacttttgttttgtatg-ctatcgagagattttacatgcactcatcgttcatggttgttttgaacagatgttccgagatcagctactcgc |
33723765 |
T |
|
| Q |
202 |
aaggctgcgaggaatatgcctacttatgtttacttcttttct |
243 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||| |
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| T |
33723764 |
aaggctgcaaggaatatgccttcttatgtttacttcttttct |
33723723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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