View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0866_low_7 (Length: 392)
Name: NF0866_low_7
Description: NF0866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0866_low_7 |
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[»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 35922766 - 35922368
Alignment:
Q |
1 |
caatgttataatgttttatgcacctgtgctatttagttctgttgggtttaaggatgatgctgcccttatgtcatctgtgataactggcgttgttaatgct |
100 |
Q |
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T |
35922766 |
caatgttataatgttttatgcacctgtgctatttagttctgttgggtttgaggatgatgctgcccttatgtcatctgtgataactggcgttgttaatgct |
35922667 |
T |
 |
Q |
101 |
tttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggtcttcaaatgctcatttgtcaggtaactatgt |
200 |
Q |
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T |
35922666 |
tttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggccttcaaatgctcatttgtcaggtaactatgt |
35922567 |
T |
 |
Q |
201 |
tgtgtatttt---ttttaccagaataaaaagatttatg------cnnnnnnnnnaataatttaacaatgtacannnnnnnnnccaactatatttgatgat |
291 |
Q |
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T |
35922566 |
tgtgtatttttttttttaccagaataaaaagagttatgtttttttttttatttttataatttaacaatgtaca-ttttttttccaactatatttgttgat |
35922468 |
T |
 |
Q |
292 |
gtccatctcattggaatcgctgcatctattggacccaaatttgtaatttatggaatccctggtgagtttccaaagtgttatgcaattgttgtggtgctat |
391 |
Q |
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T |
35922467 |
gtgca-aagattggagttgctgcatctattggagccaaatttggaattgatggaaaccctggtgagttaccaaagtggtatgcaattgttgtggtgctat |
35922369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 36202292 - 36202486
Alignment:
Q |
1 |
caatgttataatgttttatgcacctgtgctatttagttctgttgggtttaaggatgatgctgcccttatgtcatctgtgataactggcgttgttaatgct |
100 |
Q |
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||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||| | |||||||| |||| || || || |||||||||| | |
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T |
36202292 |
caatgttatcatgttttatgcacctgtgctatttaattccattgggtttaaggacgatgcttcacttatgtcggctgtcatcaccggtgttgttaatgtt |
36202391 |
T |
 |
Q |
101 |
tttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggtcttcaaatgctcatttgtcaggtaac |
195 |
Q |
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T |
36202392 |
gttgctacttgtgtctcaatttatggagttgataagtggggtaggagagcccttttccttgaaggtggtgctcaaatgctcatatgccaggtaac |
36202486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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