View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_high_12 (Length: 406)
Name: NF0867_high_12
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 30 - 398
Target Start/End: Complemental strand, 2820537 - 2820169
Alignment:
| Q |
30 |
gtttcaaccgcacaggattggaatcttcgtttatttacgcaggtacagacatatctaaaggctttctgataagttataacacatatcagtatacaaaatg |
129 |
Q |
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| T |
2820537 |
gtttcaaccgcacaggattggaatcttcgtttatttacgcaggtacagacatatctaaaggctttctgataagttataacacatatcagtatacaaaatg |
2820438 |
T |
|
| Q |
130 |
atgatattttgtcacaaatatgtaggattggattaaagagtctgaacaaggattcaatcactcaaacttggcagaccaatgtacatataggtagttccat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2820437 |
atgatattttgtcacaaatatgtaggattggattaaagagtctgaacaaggattcaatcactcaaacttggcagaccaatgtacatataggtagttccat |
2820338 |
T |
|
| Q |
230 |
ttaatctcagatcacatatgttttattttttatcccaaaattcatcatgtacatttaaattaatataatatgtatatatatgtatttgattttccttgat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2820337 |
ttaatctcagatcacatatgttttattttttatcccaaaattcatcatctacatttaaattaatataatatgtatatgtatgtatttgattttccttgat |
2820238 |
T |
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| Q |
330 |
atcagatacaaagtttatattgaaggatacgcgtggtctgtgagtgagaaatacattctagcctatgat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2820237 |
atcagatacaaagtttatattgaaggatacgcgtggtctgtgagtgagaaatacattctagcctgtgat |
2820169 |
T |
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