View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_high_2 (Length: 691)
Name: NF0867_high_2
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 14 - 662
Target Start/End: Complemental strand, 37816769 - 37816099
Alignment:
| Q |
14 |
gaaggatgttaaattgtggtagtctcaacacaattaccaccacaatgtatgttttgatggtaaagtgtgattatatgtctctcttaataaaggattagtg |
113 |
Q |
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| T |
37816769 |
gaaggatgttaaattgtggtagtctcaacacaattaccaccacaatgtatgttttgatggtaaagtgtgattatatgtctctcttaataaaggattagtg |
37816670 |
T |
|
| Q |
114 |
tgtttggtgtatgtaaaaactaagtttagtttagatgatctaattagtcttctttcaataatcttcaatgtcttttggatcagagaaaatcacttttgaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37816669 |
tgtttggtgtatgtaaaaactaagtttagtttagatgatctaattagtcttctttcaataatcttcaatgtcttttggatcagagaaaatcacttttgaa |
37816570 |
T |
|
| Q |
214 |
acatgaataattttagttacataatagaatcatgtttataactgatgaaagnnnnnnnnnnnnnngaagcactaatgaaaatgcattaaaataaatttct |
313 |
Q |
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| T |
37816569 |
acatgaataattttagttacataatagaatcatgtttataactgatgaaag-tttttttttttttgaagcactaatgaaaatgcattaaaataagtttct |
37816471 |
T |
|
| Q |
314 |
aagtcattttggatatcatgatttgagtcatgcttaggttgagtgcaatttaaagtttttcgcaggtgcatgattcaaatcatacgcactatagagtaa- |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |
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| T |
37816470 |
aagtcattttggatatcatgatttgagtcatgcttaggttgagtgcaatttaaagtttttcgtaggtgcatgattaaaatcatgcgcactatagagtaat |
37816371 |
T |
|
| Q |
413 |
-------tcnnnnnnngtgatgattcgaattaag--ataagggtgtcaatctctcagataaaacggaactttga-------------tgtgtatcttgcc |
490 |
Q |
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| |||||||||||||| ||| |||||||||||||| ||| |||||||| |||||||||| |||||||||||| |
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| T |
37816370 |
atttttttttttttttgtgatgattcgaatcaagatataagggtgtcaatttctaagataaaatggaactttgaatttactcctttttgtgtatcttgct |
37816271 |
T |
|
| Q |
491 |
aaagggaaattcaaattactttgaaggataattcaaattaacttggttataatattgatttgaatcatgttacttgggattctaatcatgcctataaaat |
590 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
37816270 |
aaagggaaattcaaattactttgaagggtaattcaaattaactttgttataatgttgatttgaatcatgttacttgggattctaatgatgcctacaaaat |
37816171 |
T |
|
| Q |
591 |
ttcannnnnnnaatgcatttaacttcctcgtatagtctcttctttatgccacaccgattcatttacacattc |
662 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37816170 |
ttcatttttttaatgcatttaacttcctcgtatagtctcttctttatgccacaccgattcatttacacattc |
37816099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 511 - 559
Target Start/End: Complemental strand, 25811702 - 25811654
Alignment:
| Q |
511 |
ttgaaggataattcaaattaacttggttataatattgatttgaatcatg |
559 |
Q |
| |
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||||||| |||||||||| |||||||| | ||||||||||||| ||||| |
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|
| T |
25811702 |
ttgaagggtaattcaaatcaacttggtgaaaatattgatttgagtcatg |
25811654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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