View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_high_20 (Length: 295)
Name: NF0867_high_20
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_high_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 41993276 - 41993002
Alignment:
| Q |
9 |
agcagagaatatcaagagcaaaatagactttgagacaaaattgatatcgtt----aatcattgattgatataattcattgatattcggatgtacataaag |
104 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41993276 |
agcagagaatatcaagagcaaaatggactttgagacaaaattgatatcgttcgttaatcattgattgatataattcattgatattcggatgtacataaag |
41993177 |
T |
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| Q |
105 |
gctagctacccgtgnnnnnnnnnnntgttacactctcccataatatccaagtcgtcagctatttacaccccaccatgaatcaaaggaagaagctaaagaa |
204 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41993176 |
gctagctacccgtg-aaaaaaaaaatgttacactctcccataatatccaagccgtcagctatttacaccccaccatgaatcaaaggaagaagctaaagaa |
41993078 |
T |
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| Q |
205 |
gnnnnnnnnnnnnnnnnnnnntagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41993077 |
---------------aaaaaatagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctca |
41993002 |
T |
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