View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0867_high_21 (Length: 294)
Name: NF0867_high_21
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 38368659 - 38368406
Alignment:
| Q |
30 |
gctagggatgtattgagcgtcccattaatcgcagtggcatcagaatctccttttagtcctggcaactgtattttgaacaagtatagaagttgtatgtttt |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38368659 |
gctagggatgtattgagcatcccattaatcgcagtggcatcagaatctccttttagtcctggcaactgtattttgaacaagtatagaagttgtatgtttt |
38368560 |
T |
|
| Q |
130 |
cagaaaatctgcaagctctcgtatgctctcgtaattggttatttgggttctcacctattggtaaattttatcgcaactcatatagccttttagaatttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38368559 |
cagaaaatctgcaagctctcgtatgctctcgtaattggttatttgggttctcacctattggtaaattttatcacaactcatatagccttttagaatttgt |
38368460 |
T |
|
| Q |
230 |
ttctcatgattaatatatcattgattattatcattatattaatcttggtttcat |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38368459 |
ttctcatgattaatatatcattaattattatcattatattaatcttggtttcat |
38368406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 38378571 - 38378317
Alignment:
| Q |
30 |
gctagggatgtattgagcgtcccattaatcgcagtggcatcagaatctccttttagtcctggcaactgtattttgaacaagtatagaagttgtatgtttt |
129 |
Q |
| |
|
||||| ||||| |||||||||||||||||| |||| ||||| |||||| |||||||||| |||| |||||||||||| |||||||||||||||||| ||| |
|
|
| T |
38378571 |
gctagagatgtgttgagcgtcccattaatcacagtagcatcggaatctgcttttagtcccggcagctgtattttgaataagtatagaagttgtatggttt |
38378472 |
T |
|
| Q |
130 |
cagaaaatctgcaagctctcgtatgctctcgtaattggttatttgggttctcacctattggtaaattttatcgcaactcatatagccttttagaatttgt |
229 |
Q |
| |
|
| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||| |
|
|
| T |
38378471 |
ctgaaaatctgcaagctctcgtatgtactcataattggttatctgggttctcacctattggtaaattttatcacaattcgtatagatttttagaatttgt |
38378372 |
T |
|
| Q |
230 |
ttctcatgattaatatatc-attgattattatcattatattaatcttggtttcat |
283 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38378371 |
ttctcatgattactatatcttttgattattatcattatattaatcttggtttcat |
38378317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 30 - 277
Target Start/End: Complemental strand, 38373387 - 38373141
Alignment:
| Q |
30 |
gctagggatgtattgagcgtcccattaatcgcagtggcatcagaatctccttttagtcctggcaactgtattttgaacaagtatagaagttgtatgtttt |
129 |
Q |
| |
|
||||| ||||| || ||| | ||| ||||| |||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||| |
|
|
| T |
38373387 |
gctagagatgtgtttagcattccaataatcacagttgcatcagaatctgcttttagtcctggcagcagtattttgaacaagtatagaagttgtatggttt |
38373288 |
T |
|
| Q |
130 |
cagaaaatctgcaagctctcgtatgctctcgtaattggttatttgggttctcacctattggtaaattttatcgcaactcatatagccttttagaatttgt |
229 |
Q |
| |
|
| ||||||||||||||||||||| ||| | ||| ||||| ||||||||| |||||| |||| || ||||| |||| | ||||| ||||||||||| | |
|
|
| T |
38373287 |
cggaaaatctgcaagctctcgtactctcccataactggttgtttgggttcacacctaatggtgaa-tttattgcaattgatataattttttagaatttat |
38373189 |
T |
|
| Q |
230 |
ttctcatgattaatatatcattgattattatcattatattaatcttgg |
277 |
Q |
| |
|
||||||||| |||| | ||||||||||||||| ||||||||| ||||| |
|
|
| T |
38373188 |
ttctcatgaataatgtctcattgattattatcgttatattaaccttgg |
38373141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3673 times since January 2019
Visitors: 6174