View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_high_23 (Length: 271)
Name: NF0867_high_23
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 27700609 - 27700873
Alignment:
| Q |
1 |
cttcatttttcttcgtttttgccttaggtacgacttcccttgtttaatgtattgatgccaaaacaagatacccagttaatgacggcctcacaaaatccaa |
100 |
Q |
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| T |
27700609 |
cttcatttttcttcgtttttgccttaggtacgacttcccttgtttaatgtattgatgccaaaacaagatacccagttaatgacggcctcacaaaatccaa |
27700708 |
T |
|
| Q |
101 |
cccacgtccaaaaagaagaaatgagatccacattccacaatttgaaagccgaccctatca-atccacaagttcagtatctgatcaacttgtaagaagtga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |
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| T |
27700709 |
cccacgtccaaaaagaagaaatgagatccacattccacaatttgaaagccgaccctatcatatccataagctcagtatctgatcaacttgtaagaagtga |
27700808 |
T |
|
| Q |
200 |
aagaagactttagttttgtttagnnnnnnnncttcaaaatactgtataaccctgtgcaagaataa |
264 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
27700809 |
aagaagactttagttttgtttagtttttttccttcaaaatactgtataatcctgtgcaagaataa |
27700873 |
T |
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