View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0867_high_33 (Length: 230)
Name: NF0867_high_33
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_high_33 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 54637024 - 54636811
Alignment:
| Q |
17 |
aacctgtgtgattatagatgaaatcaaaaatctacctcagctctgaaatcttttggaaagtgatctttagcatcccatagaacatcaatttcatcgcgat |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54637024 |
aacccgtgtgattatagatgaaatcaaaaatctacctcagctctgaaatcttttggaaagtgatctttagcatcccatagaacatcaatttcatcgcgat |
54636925 |
T |
|
| Q |
117 |
taagcatcagaatattggatctaacaaaagctgtgttgaacataactcggaacatcatcatttcatgctccatatcatcattcgagttaataccctcgat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
54636924 |
taagcatcagaatattggatctaacaaaagctgtgttgaacataactcggaacatcatcatttcatgctccatatcatcattcaagttaataccctcgat |
54636825 |
T |
|
| Q |
217 |
cacaacatcacctt |
230 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54636824 |
cacaacatcacctt |
54636811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 3236711 - 3236594
Alignment:
| Q |
57 |
ctctgaaatcttttggaaagtgatctttagcatcccatagaacatcaatttcatcgcgattaagcatcagaatattggatctaacaaaagctgtgttgaa |
156 |
Q |
| |
|
||||||||| ||| || ||||||||||||| || ||||| | || ||||||||||| |||||||||| |||||| ||||| | || ||||| || || |
|
|
| T |
3236711 |
ctctgaaatttttagggaagtgatctttagtattccataatatgtcgatttcatcgcggttaagcatcaaaatatttgatcttatgaatgctgtattaaa |
3236612 |
T |
|
| Q |
157 |
cataactcggaacatcat |
174 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
3236611 |
catcacccggaacatcat |
3236594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1504 times since January 2019
Visitors: 6143