View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_high_36 (Length: 210)
Name: NF0867_high_36
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_high_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 54637024 - 54636850
Alignment:
| Q |
36 |
aacctgtgtgattatagatgaaatcaaaaatctacctcagctctgaaatcttttggaaagtgatctttagcatcccatagaacatcaatttcatcgcgat |
135 |
Q |
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| T |
54637024 |
aacccgtgtgattatagatgaaatcaaaaatctacctcagctctgaaatcttttggaaagtgatctttagcatcccatagaacatcaatttcatcgcgat |
54636925 |
T |
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| Q |
136 |
taagcatcagaatattggatctaacaaaagctgtgttgaacataactcggaacatcatcatttcatgctccatat |
210 |
Q |
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| T |
54636924 |
taagcatcagaatattggatctaacaaaagctgtgttgaacataactcggaacatcatcatttcatgctccatat |
54636850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 3236711 - 3236594
Alignment:
| Q |
76 |
ctctgaaatcttttggaaagtgatctttagcatcccatagaacatcaatttcatcgcgattaagcatcagaatattggatctaacaaaagctgtgttgaa |
175 |
Q |
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| T |
3236711 |
ctctgaaatttttagggaagtgatctttagtattccataatatgtcgatttcatcgcggttaagcatcaaaatatttgatcttatgaatgctgtattaaa |
3236612 |
T |
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| Q |
176 |
cataactcggaacatcat |
193 |
Q |
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| T |
3236611 |
catcacccggaacatcat |
3236594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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