View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_high_8 (Length: 465)
Name: NF0867_high_8
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 61 - 406
Target Start/End: Complemental strand, 769792 - 769448
Alignment:
| Q |
61 |
atcaccctgacgaaaatctaataaggtgaacaaccctaacaggttcccccagtaagcaattagtttatgcctcaaacaactttaatgaaactatctaagg |
160 |
Q |
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| T |
769792 |
atcaccctgacgaaaatctaataaggtgaacaaccctaacaggttcccccagtaagcaattagtttatgcctcaaacaactttaatgaaactatctaagg |
769693 |
T |
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| Q |
161 |
ggcactacttggctatcaattctgaccgtatccaaaaactatataatatatacttcattatttatctatactcttctaattaacaggacctagttgcacc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
769692 |
ggcactacttggctatcaattctgaccgtatccaaaaactcta--atatatacttcattatttatctatattcttctaattaacaggacctagttgcacc |
769595 |
T |
|
| Q |
261 |
ttccaatctaacattctcagcaaagacacaaatcattaatagtaaaataaagataattaaattccaatgtgttatattatgcatgttttgatgtttccat |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
769594 |
ttccaatctaacattctcagcaaagacacaaatcattaatagtaaaataaagataattaaattccaatgtgttatattatgcatgttttgatgtttccat |
769495 |
T |
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| Q |
361 |
tcattg-nnnnnnnntcactcacttgagagtggcttctgcgctttcg |
406 |
Q |
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| T |
769494 |
tcattgaaaaaaaaatcactcacttgagagtggcttctgcgctttcg |
769448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 54636779 - 54636723
Alignment:
| Q |
403 |
ttcgcactctccctgcaatacagtagcaaggaattccatgataattacacaattcag |
459 |
Q |
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| T |
54636779 |
ttcgcactctccctgcaatacagtagcaaggaattccatgataattacacaattcag |
54636723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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