View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_low_1 (Length: 692)
Name: NF0867_low_1
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 208 - 663
Target Start/End: Complemental strand, 31170699 - 31170244
Alignment:
| Q |
208 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
307 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31170699 |
attgtcaaaaccactcgcaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
31170600 |
T |
|
| Q |
308 |
cgttttcagatacgacaattattatggtcaccgtaggtactataccacttgccttcatacacaaggttttctaaaagatacgaatatgcacaataataca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31170599 |
cgttttcagatacgacaattattatggtcaccgtaggtactataccacttgccttcatacacaaggttttctaaaagatacgaatatgcacaataataca |
31170500 |
T |
|
| Q |
408 |
cacttttagactttgtttgcgagtttttaagagaagggaggagagggttttgnnnnnnnngaaggaacaagtgnnnnnnntagaagacattaaaagggga |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||| |
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| T |
31170499 |
cacttttagactttgtttgcgagtttttaagagaagggaggagagggttttgaaaaaaaagaaggaacaagtgaaaaaaatagtagacattaaaagggga |
31170400 |
T |
|
| Q |
508 |
ggactttgaaagttaattttttcttcatatataactactttggaaggggagagcaagtggaaaaaattaataatattttatttgctactatctttaagaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31170399 |
ggactttgaaagttaattttttcttcatatataactactttggaaggggagagcaagtggaaaaaattaataatatttgatttgctactatctttaagaa |
31170300 |
T |
|
| Q |
608 |
tgtaatgtatgtaatcaactactgctggtatcctgtgagtttagctcagttgatag |
663 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
31170299 |
tgtaatgtatgtaatcaactgctgctggtattctgtgagtttagctcagttgatag |
31170244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 208 - 635
Target Start/End: Complemental strand, 31152420 - 31151990
Alignment:
| Q |
208 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31152420 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
31152321 |
T |
|
| Q |
308 |
cgttttcagatacgacaattattatggtcaccgtaggtactataccacttgccttcatacacaaggttttctaaaagatacgaatatgcacaataataca |
407 |
Q |
| |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31152320 |
cattttcagatacgacaattattagggtcaccgtaggtactataccacttgccttcatacacaaggttttctaaaagatacgaatatgcacagtaataca |
31152221 |
T |
|
| Q |
408 |
cacttttagactttgtttgcgagtttttaagagaagggaggagagggttttg--nnnnnnnngaaggaacaagtg-nnnnnnntagaagacattaaaagg |
504 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
31152220 |
cacttttaggctttgtttgcgagtttttaagagaagggaggagagggtttcgaaaaaaaaaagaaggaacaagtgaaaaaaaatagaagacattaaaagg |
31152121 |
T |
|
| Q |
505 |
ggaggactttgaaagttaattttttcttcatatataactactttggaaggggagagcaagtggaaaaaattaataatattttatttgctactatctttaa |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31152120 |
ggaggactttgaaagttaattttttcttcatatataactactttggaaggggagagcaagtggaaaaaattaataatattttatttgctactatctttaa |
31152021 |
T |
|
| Q |
605 |
gaatgtaatgtatgtaatcaactactgctgg |
635 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
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| T |
31152020 |
gaatgtaatgtatgtaatcaactgctgctgg |
31151990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 208 - 459
Target Start/End: Complemental strand, 31170981 - 31170731
Alignment:
| Q |
208 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31170981 |
attgtcaaaaccactcacaatgcatgattttgggtatacattttcttatagttcataaataacaaagccatcatagtaccatttcaagaaatagagcact |
31170882 |
T |
|
| Q |
308 |
cgttttcagatacgacaattattatggtcaccgtaggtactataccacttgccttcatacacaaggttttctaaaagatacgaatatgcacaataataca |
407 |
Q |
| |
|
| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31170881 |
cattttc-gatacgacaattattagggtcaccgtaggtactataccacttgccttcatacacaaggttttttaaaagatacgaatatgcacaataataca |
31170783 |
T |
|
| Q |
408 |
cacttttagactttgtttgcgagtttttaagagaagggaggagagggttttg |
459 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
31170782 |
tacttttaggctttgtttgcgagtttttaagagaagagaggagagggttttg |
31170731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 31152602 - 31152489
Alignment:
| Q |
27 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31152602 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
31152503 |
T |
|
| Q |
127 |
tattttgtatctct |
140 |
Q |
| |
|
|||||||||||||| |
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| T |
31152502 |
tattttgtatctct |
31152489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 31171164 - 31171051
Alignment:
| Q |
27 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31171164 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
31171065 |
T |
|
| Q |
127 |
tattttgtatctct |
140 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
31171064 |
tattctgtatctct |
31171051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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