View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_low_12 (Length: 432)
Name: NF0867_low_12
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 425
Target Start/End: Original strand, 54847894 - 54848300
Alignment:
| Q |
30 |
cttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacattttttaacaattgtattttataatttttctcttaagctgaaca |
129 |
Q |
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| T |
54847894 |
cttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacattttt-aacaattgtattttataatttttctcttaagctgaaca |
54847992 |
T |
|
| Q |
130 |
aatggaacaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaaagtaagagcatttaattgtttgtttaa-------- |
221 |
Q |
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| T |
54847993 |
aatggaagaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaaagtaagagcatttaattgtttgtttaattaattaa |
54848092 |
T |
|
| Q |
222 |
----ttaattttgcttgattaaattttgtgttatatgtatgagcaggagaggaggattatcaaggtattactcagggaaagcaagatcatttgtttgtat |
317 |
Q |
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| T |
54848093 |
ttaattaattttgcttgattaaattttgtgttatatgtatgagcaggagaggaggattatcaaggtattactcagggaaagcaagatcatttgtttgtat |
54848192 |
T |
|
| Q |
318 |
ggaagatgtacattcggttgaggatttgaagaaaccaaaacatcctgatgcaaagaaaagaaagaaacattctcatagaaaggaattcatcaaccttaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54848193 |
ggaagatgtacattcggttgaggatttgaagaaaccaaaacatcctgatgcaaagaaaagaaagaaacattctcataggaaggaattcatcaaccttaat |
54848292 |
T |
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| Q |
418 |
tcatatca |
425 |
Q |
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| T |
54848293 |
ccatatca |
54848300 |
T |
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