View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_low_15 (Length: 367)
Name: NF0867_low_15
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 64 - 296
Target Start/End: Original strand, 52167378 - 52167618
Alignment:
| Q |
64 |
tcttcataaaaattagttactactactaaaaaacactattttgctcctatttatggatttatgcgaaattctaaaataatgatggaagagtattttagaa |
163 |
Q |
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| T |
52167378 |
tcttcataaaaattagttact---actaaaaaacactattttgctcctatttatggatttatgcgaaattctaaaataatgatggaagagtattttagaa |
52167474 |
T |
|
| Q |
164 |
gatgcttggagatttatatcaaatgc---tattataatgtgtttgaaagaatcctaaaaaagtttgttaaatttcaaactatttatataatgttctt--- |
257 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52167475 |
gatgcttggagatttatatcaaatgctagtattataatgtgtttgaaagaatcctaaaaaagtttgttaaatttcaaactatttatataatgttcttgaa |
52167574 |
T |
|
| Q |
258 |
-----gctgtcaaattaccaagttaaattttatttgatcaataa |
296 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
52167575 |
aaatagctgtcaaattaccaagttaaatttaatttgatcaataa |
52167618 |
T |
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