View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_low_18 (Length: 349)
Name: NF0867_low_18
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 1372473 - 1372782
Alignment:
| Q |
30 |
ccattaacaacgtcaaattcatcatcccaaccaacaacttatgcatataaccttaggttgtgcggccagtcttctactacctcccatttttcctgcaaat |
129 |
Q |
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| T |
1372473 |
ccattaacaacgtcaaattcatcatcccaaccaacaacttatgcatataaccttaggttgtacggccagtcttctagtacctcccatttttcctgcaaat |
1372572 |
T |
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| Q |
130 |
ccgtaaagaaggcatgaaacataagcccaatcaatagctatgaacagaaattgttaacattagccatacgattcagtagaagatgaagcagaaacgcgat |
229 |
Q |
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| T |
1372573 |
ctgtaaagaaggcatgaaacataagcccaatcaatagttatgaacagaaattgttaacattagccatacgattcagtagaagatgaagcagaaacgcgat |
1372672 |
T |
|
| Q |
230 |
gacgatgaagcaaaaaatgtgaagatgcataaacagggtttgaagtagagatgagaagaaacaatgaaggagaagatgaatggtcgaacctaaaccaaga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1372673 |
gacgatgaagcaaaaaatgtgaagatgcataaacagggtttgaagtagagatgagaagaaacaatgaaggagaagatgaatgttcgaacctaaaccaaga |
1372772 |
T |
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| Q |
330 |
ggaagaataa |
339 |
Q |
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| T |
1372773 |
ggaagaataa |
1372782 |
T |
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