View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_low_19 (Length: 335)
Name: NF0867_low_19
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 33 - 335
Target Start/End: Complemental strand, 41993292 - 41993002
Alignment:
| Q |
33 |
tgaaaggagaaattgaagcagagaatatcaagagcaaaatagactttgagacaaaattgatatcgtt----aatcattgattgatataattcattgatat |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41993292 |
tgaaaggagaaattgaagcagagaatatcaagagcaaaatggactttgagacaaaattgatatcgttcgttaatcattgattgatataattcattgatat |
41993193 |
T |
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| Q |
129 |
tcggatgtacataaaggctagctacccgtgnnnnnnnnnnntgttacactctcccataatatccaagtcgtcagctatttacaccccaccatgaatcaaa |
228 |
Q |
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| T |
41993192 |
tcggatgtacataaaggctagctacccgtg-aaaaaaaaaatgttacactctcccataatatccaagccgtcagctatttacaccccaccatgaatcaaa |
41993094 |
T |
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| Q |
229 |
ggaagaagctaaagaagnnnnnnnnnnnnnnnnnnnntagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaa |
328 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41993093 |
ggaagaagctaaagaa---------------aaaaaatagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaa |
41993009 |
T |
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