View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0867_low_20 (Length: 331)

Name: NF0867_low_20
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0867_low_20
NF0867_low_20
[»] chr4 (20 HSPs)
chr4 (1-218)||(5423002-5423219)
chr4 (1-217)||(5363636-5363852)
chr4 (4-218)||(5355165-5355379)
chr4 (2-218)||(5345685-5345901)
chr4 (51-218)||(5379548-5379715)
chr4 (36-215)||(5503063-5503242)
chr4 (1-218)||(5357276-5357493)
chr4 (76-186)||(5467337-5467447)
chr4 (88-218)||(5413331-5413461)
chr4 (88-218)||(5393882-5394012)
chr4 (82-139)||(5551427-5551484)
chr4 (82-139)||(5888149-5888206)
chr4 (82-130)||(5891160-5891208)
chr4 (82-139)||(5897012-5897069)
chr4 (83-139)||(5611796-5611852)
chr4 (82-146)||(5849938-5850002)
chr4 (82-145)||(253683-253746)
chr4 (82-139)||(5562980-5563037)
chr4 (86-138)||(5856326-5856378)
chr4 (82-139)||(5854914-5854971)
[»] chr5 (1 HSPs)
chr5 (1-218)||(20329683-20329900)
[»] chr2 (2 HSPs)
chr2 (81-187)||(14560085-14560191)
chr2 (87-155)||(32549451-32549519)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 5423219 - 5423002
Alignment:
Q  1 cactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaattt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5423219 cactgaccaccaattgcgacgatggcggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaattt 5423120  T
Q  101 cttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5423119 cttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagat 5423020  T
Q  201 gaaatgcttcacaggttc 218  Q
    ||||||||||||||||||    
T  5423019 gaaatgcttcacaggttc 5423002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5363636 - 5363852
Alignment:
Q  1 cactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaattt 100  Q
    ||||||||| | ||||| |||||| ||||||||||||||||||  ||||||||||||||||||||| || ||||||||||||||||||||| |||| |||    
T  5363636 cactgaccaacgattgcaacgatgatggagtgcaagggctgccgacaccagcatccgagttatctcattctcataatgacagttcaattgactggagttt 5363735  T
Q  101 cttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagat 200  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  5363736 cttaagtgtggagttgggatttatttttgggtttggaattttcatcctcccccttatttgcttgatgagatggaggttgtggtattccaagcatgcagat 5363835  T
Q  201 gaaatgcttcacaggtt 217  Q
    ||||||| | |||||||    
T  5363836 gaaatgcattacaggtt 5363852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 5355165 - 5355379
Alignment:
Q  4 tgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaatttctt 103  Q
    |||||| ||||||| | |||| ||||||||||||||  || ||||||||||| || ||||||| || |||||||||||||||||| ||||||||||||||    
T  5355165 tgaccaacaattgcaatgatgatggagtgcaagggcaaccgccaccagcatctgaattatctcattctcataatgacagttcaatcgattggaatttctt 5355264  T
Q  104 aagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagatgaa 203  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  5355265 aagtttggagttgggatttatttttggctttggaattttcatcctcccccttatttgcttgatgaaatggaggttgtggtattccaaacatgcagatgaa 5355364  T
Q  204 atgcttcacaggttc 218  Q
    |||||| ||||||||    
T  5355365 atgctttacaggttc 5355379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 5345901 - 5345685
Alignment:
Q  2 actgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaatttc 101  Q
    ||||| ||||||||||||||||| | |||| || ||||| ||||| |||| |||||| ||||||| || ||||||||||||||||||||||||||| |||    
T  5345901 actgagcaccaattgcgacgatgatagagttcatgggcttccaccgccagaatccgaattatctcattttcataatgacagttcaattgattggaacttc 5345802  T
Q  102 ttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagatg 201  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||    
T  5345801 ttaagtgtggagttgggatttatttttggctttggaattttcctcctcccccttatttgcttgatgagatggaggttgtggtattccaaacatgcagatg 5345702  T
Q  202 aaatgcttcacaggttc 218  Q
    |||||||| ||||||||    
T  5345701 aaatgctttacaggttc 5345685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 5379548 - 5379715
Alignment:
Q  51 gcatccgagttatctccttgtcataatgacagttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctcc 150  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5379548 gcatccgagttatctcattctcataatgacaattcaattgattggaatctcttaagtgtggagttgggatttatttttggctttggaattttcatcctcc 5379647  T
Q  151 cccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagatgaaatgcttcacaggttc 218  Q
    ||||| |||| ||||||||||||||||||||||||| ||| ||||  |||||||||||| ||||||||    
T  5379648 cccttatttggttgatgaaatggaggttgtggtatttcaaacatgtcgatgaaatgctttacaggttc 5379715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 5503063 - 5503242
Alignment:
Q  36 gggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttg 135  Q
    ||||||||||| |||||||| || | ||||| || || ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||  |||    
T  5503063 gggctgccaccgccagcatctgaatcatctcattctcgtaatgacagtttaattgattgggatttcttaagtgtggagttgggttttatttttggttttg 5503162  T
Q  136 gaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagatgaaatgcttcacagg 215  Q
    |||||||||| ||||||||| |||||| || |||||||||| |||||||||| || |||| |||||  |||||| |||||    
T  5503163 gaattttcattctcccccttatttgctggaagaaatggaggctgtggtattctaaacatgtagatgggatgctttacagg 5503242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 5357276 - 5357493
Alignment:
Q  1 cactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaattt 100  Q
    ||||||||| |||||||  ||||| |||| | || ||||||||||||| ||||||||| | ||||| || |||||  || ||||||||||||||||||||    
T  5357276 cactgaccagcaattgcagcgatgatggaatccaggggctgccaccacaagcatccgaatcatctcattctcataccgagagttcaattgattggaattt 5357375  T
Q  101 cttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagat 200  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||| || ||  || |||  | |   ||||||||||||||||||||||| |||| ||||    
T  5357376 cttaagtgtggagttgggatttattttcggctttggagttttcattcttcctattattttatggggaaaatggaggttgtggtattccaaacatgtagat 5357475  T
Q  201 gaaatgcttcacaggttc 218  Q
    ||||| ||| ||| ||||    
T  5357476 gaaattctttacaagttc 5357493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 5467447 - 5467337
Alignment:
Q  76 atgacagttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggag 175  Q
    |||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| || ||| ||| |||||||||||||||    
T  5467447 atgagagttcaattgattggagtttcttaagtatggagttgggatgtatttttggccttggaattttcatccttcctcttattttcttgatgaaatggag 5467348  T
Q  176 gttgtggtatt 186  Q
    |||||||||||    
T  5467347 gttgtggtatt 5467337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 5413331 - 5413461
Alignment:
Q  88 ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattc 187  Q
    |||| |||| |||| ||||| | |||||||||||| |||||||| ||||| |||||||||| ||  || |||| | || ||||| |||||||||||||||    
T  5413331 ttgaatggagtttcataagtattgagttgggatttttttttggctttggagttttcatccttcctgttttttgttggaagaaattgaggttgtggtattc 5413430  T
Q  188 caatcatgcagatgaaatgcttcacaggttc 218  Q
    ||| || | ||||||||||||| ||||||||    
T  5413431 caaacacgtagatgaaatgctttacaggttc 5413461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 5393882 - 5394012
Alignment:
Q  88 ttgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattc 187  Q
    |||| |||| |||| ||||| | |||||||||||| |||||||| ||||| |||||||||| ||  || |||| | || ||||| | |||||||||||||    
T  5393882 ttgaatggagtttcataagtattgagttgggatttctttttggctttggagttttcatccttcctgttttttgttggaagaaattgcggttgtggtattc 5393981  T
Q  188 caatcatgcagatgaaatgcttcacaggttc 218  Q
    ||| || | ||||||||||||| ||||||||    
T  5393982 caaacacgtagatgaaatgctttacaggttc 5394012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 5551484 - 5551427
Alignment:
Q  82 gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat 139  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  5551484 gttcaattgactggaattttttaagtgtggagttgggatttgtttttgggcttggaat 5551427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 5888149 - 5888206
Alignment:
Q  82 gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat 139  Q
    |||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  5888149 gttcaattgaatggaattttttaagtgtggaattgggatttatttttggacttggaat 5888206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 5891160 - 5891208
Alignment:
Q  82 gttcaattgattggaatttcttaagtgtggagttgggatttatttttgg 130  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  5891160 gttcaattgattggaattttttaagtgtggagttgggatttgtttttgg 5891208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 5897012 - 5897069
Alignment:
Q  82 gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat 139  Q
    ||||||||||  ||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  5897012 gttcaattgaacggaattttttaagtgtggaattgggatttatttttggacttggaat 5897069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 5611852 - 5611796
Alignment:
Q  83 ttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat 139  Q
    ||||||||| |||||||| ||||||||||||||||||||| ||||||| || |||||    
T  5611852 ttcaattgactggaattttttaagtgtggagttgggatttgtttttgggctcggaat 5611796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 5849938 - 5850002
Alignment:
Q  82 gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatc 146  Q
    |||| ||||| |||||||| ||||||||||||||||||||| ||||||| || |||||| |||||    
T  5849938 gttcgattgactggaattttttaagtgtggagttgggatttgtttttgggctcggaattatcatc 5850002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 253683 - 253746
Alignment:
Q  82 gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcat 145  Q
    ||||||||||||||||||| |||||| ||||  | |||||| ||||||| ||||||||||||||    
T  253683 gttcaattgattggaattttttaagtatggaacttggatttgtttttgggcttggaattttcat 253746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 5563037 - 5562980
Alignment:
Q  82 gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat 139  Q
    |||||||||| |||||||| ||||||||||| ||||||||| ||||||| || |||||    
T  5563037 gttcaattgactggaattttttaagtgtggaattgggatttgtttttgggctcggaat 5562980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 5856378 - 5856326
Alignment:
Q  86 aattgattggaatttcttaagtgtggagttgggatttatttttggccttggaa 138  Q
    ||||||||||||||| |||||||||||  | |||||||||||||| |||||||    
T  5856378 aattgattggaattttttaagtgtggaactaggatttatttttgggcttggaa 5856326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 5854914 - 5854971
Alignment:
Q  82 gttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaat 139  Q
    |||||||||| |||||||| || ||| |||||||||||||| ||||||| || |||||    
T  5854914 gttcaattgactggaattttttgagtatggagttgggatttgtttttgggctcggaat 5854971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 20329683 - 20329900
Alignment:
Q  1 cactgaccaccaattgcgacgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataatgacagttcaattgattggaattt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20329683 cactgaccaccaattgcgatgatggtggagtgcaagggctgccaccaccagcatccgagttatctccttgtcataataacagttcaattgattggaattt 20329782  T
Q  101 cttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20329783 cttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcgtgcagat 20329882  T
Q  201 gaaatgcttcacaggttc 218  Q
    ||||||||||||||||||    
T  20329883 gaaatgcttcacaggttc 20329900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 14560085 - 14560191
Alignment:
Q  81 agttcaattgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgt 180  Q
    |||| ||||||||| |||||||||||||| ||| ||||||| | ||||||  || || ||||  |||| || ||| ||| ||||| || ||||||||| |    
T  14560085 agtttaattgattgaaatttcttaagtgttgaggtgggattcacttttggttttagagtttttttccttcctcttattttcttgaagagatggaggtttt 14560184  T
Q  181 ggtattc 187  Q
    |||||||    
T  14560185 ggtattc 14560191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 32549451 - 32549519
Alignment:
Q  87 attgattggaatttcttaagtgtggagttgggatttatttttggccttggaattttcatcctccccctt 155  Q
    ||||||||||||||||| ||||  ||||||||||| | ||||||  |||||||||| || || ||||||    
T  32549451 attgattggaatttcttgagtgctgagttgggattcacttttggttttggaattttgatactacccctt 32549519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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