View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_low_22 (Length: 305)
Name: NF0867_low_22
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 43142799 - 43142890
Alignment:
| Q |
185 |
aaattactttaccaaaagtatcttcgttctttgtattattttgaagttaaaggttctgttacaaaacgatatgtatatgttttaacatgaaa |
276 |
Q |
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| T |
43142799 |
aaattactttaccaaaagtatcttcgttctttgtattattttgaagttaaaggttctgttacaaaacgatgtgtatatgttttaacatgaaa |
43142890 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 43142681 - 43142752
Alignment:
| Q |
14 |
agagaacaaaaccatgctacgtactaataccatcaattagtgttctcaaacaaagtgcgttcaattgtgtaa |
85 |
Q |
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| T |
43142681 |
agagaacaaaaccatgctatgtactaataccatcaattagtgttctcaaacaaattgcgttcaattgtgtaa |
43142752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 43142744 - 43142794
Alignment:
| Q |
110 |
attgtgcaatttaatccacgtaattttgttcatgaggtccttgttctatac |
160 |
Q |
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| T |
43142744 |
attgtgtaatttaatccacgtaattttgttcatgaggttcttgttctatac |
43142794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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