View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0867_low_29 (Length: 262)

Name: NF0867_low_29
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0867_low_29
NF0867_low_29
[»] chr2 (2 HSPs)
chr2 (5-131)||(43655103-43655229)
chr2 (223-251)||(40546993-40547021)
[»] chr3 (4 HSPs)
chr3 (45-127)||(26596239-26596321)
chr3 (46-127)||(45445310-45445391)
chr3 (46-127)||(55091872-55091953)
chr3 (46-127)||(38445067-38445148)
[»] chr4 (1 HSPs)
chr4 (46-127)||(15624729-15624810)
[»] chr7 (5 HSPs)
chr7 (45-127)||(46997171-46997253)
chr7 (46-127)||(10055273-10055354)
chr7 (46-127)||(19023447-19023528)
chr7 (46-127)||(20731108-20731189)
chr7 (44-127)||(37495562-37495645)
[»] chr1 (3 HSPs)
chr1 (46-127)||(36612086-36612167)
chr1 (46-127)||(40150653-40150734)
chr1 (50-127)||(12532423-12532500)
[»] chr5 (1 HSPs)
chr5 (50-127)||(6842770-6842847)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 43655103 - 43655229
Alignment:
Q  5 acatatttatatttgaaatgtttcaaattaagtcaagcaacgtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgc 104  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43655103 acatatttatatttgaaatgtttctaattaagtcaagcaacgtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgc 43655202  T
Q  105 aggttcgaatcctgctgtcgacggctc 131  Q
    |||||||||||||||||||||||||||    
T  43655203 aggttcgaatcctgctgtcgacggctc 43655229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 40547021 - 40546993
Alignment:
Q  223 tgatgatgaatgacttaattcctcttcat 251  Q
    |||||||||||||||||||||||||||||    
T  40547021 tgatgatgaatgacttaattcctcttcat 40546993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 26596321 - 26596239
Alignment:
Q  45 cgtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26596321 cgtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 26596239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 45445391 - 45445310
Alignment:
Q  46 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  45445391 gtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 45445310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 55091953 - 55091872
Alignment:
Q  46 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  55091953 gtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 55091872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 38445148 - 38445067
Alignment:
Q  46 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||| |||||||||||||    
T  38445148 gtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggctacgcccgcgcaggttcgaaccctgctgtcgacg 38445067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 15624810 - 15624729
Alignment:
Q  46 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15624810 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 15624729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 46997171 - 46997253
Alignment:
Q  45 cgtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  46997171 cgtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 46997253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 10055354 - 10055273
Alignment:
Q  46 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  10055354 gtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 10055273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 19023528 - 19023447
Alignment:
Q  46 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  19023528 gtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 19023447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 20731108 - 20731189
Alignment:
Q  46 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  20731108 gtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 20731189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 37495645 - 37495562
Alignment:
Q  44 acgtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  37495645 acgtcaatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 37495562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 36612167 - 36612086
Alignment:
Q  46 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  36612167 gtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 36612086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 40150734 - 40150653
Alignment:
Q  46 gtcgatatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  40150734 gtcgatatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgtcgacg 40150653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 12532423 - 12532500
Alignment:
Q  50 atatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||| |||||||| ||||    
T  12532423 atatgtccgagtggttaaggagacagacttgaaatctgttgggctacgcccgcgcaggttcgaaccctgctgttgacg 12532500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 6842847 - 6842770
Alignment:
Q  50 atatgtccgagtggttaaggagacagactcgaaatctgttgggctttgcctgcgcaggttcgaatcctgctgtcgacg 127  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  6842847 atatgtccgagtggttaaggagacagacttgaaatctgttgggcttcgcccgcgcaggttcgaaccctgctgttgacg 6842770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1628 times since January 2019
Visitors: 6145