View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_low_3 (Length: 612)
Name: NF0867_low_3
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 186 - 603
Target Start/End: Complemental strand, 13447913 - 13447497
Alignment:
| Q |
186 |
cacaatacctgccacaagtactctcaaatcaatgaagtaacatttagctactctggcagatttaacatgaattttcgaatagtttaaacttaattgtttt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13447913 |
cacaatacctgccacaagtactctcaaatcaatgaagtaacatttagctactctggcagatttaacatgaattttcgaatagttttc-cttaattgtttt |
13447815 |
T |
|
| Q |
286 |
gattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttct |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13447814 |
gattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttct |
13447715 |
T |
|
| Q |
386 |
gtcagtctgacattgctgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggtttctgtactttaaatctctagattttgtgggatcctgtc |
485 |
Q |
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| T |
13447714 |
gtcagtctgacattgccgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggttcctgtactttaaatctctagattttgtgggatcctgtc |
13447615 |
T |
|
| Q |
486 |
nnnnnnnnnnnnnnnngaccgaagattagcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtctggttttca |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13447614 |
tgtttctttttcttttgaccgaagattagcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtctggttttca |
13447515 |
T |
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| Q |
586 |
atcatctacaatctgtgc |
603 |
Q |
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|||||||||||||||||| |
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| T |
13447514 |
atcatctacaatctgtgc |
13447497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 13448098 - 13447972
Alignment:
| Q |
1 |
taaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcg |
100 |
Q |
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| T |
13448098 |
taaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcg |
13447999 |
T |
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| Q |
101 |
tggtttcgtcaagcggaagtgtgaatg |
127 |
Q |
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| T |
13447998 |
tggtttcgtcaagcggaagtgtgaatg |
13447972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 13454571 - 13454468
Alignment:
| Q |
17 |
cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcgg |
116 |
Q |
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| T |
13454571 |
cttaaaagattgagaaacctcaagccgcatgattaattcaaaggagcattgtgtaagttttttcaactttttctaataacattgttgtttcgtcaagcag |
13454472 |
T |
|
| Q |
117 |
aagt |
120 |
Q |
| |
|
|||| |
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|
| T |
13454471 |
aagt |
13454468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 13439937 - 13439829
Alignment:
| Q |
17 |
cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcgg |
116 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||||| || ||||||||| |||||||||| | ||||||||| || || | |||||||||| | |
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| T |
13439937 |
cttaaaagattgagagaccccaagcgacatgattaattcaaaggactattgtctatgttttttcaacctatcctaataatattgttggttcgtcaagcag |
13439838 |
T |
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| Q |
117 |
aagtgtgaa |
125 |
Q |
| |
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||||||||| |
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| T |
13439837 |
aagtgtgaa |
13439829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 13454399 - 13454315
Alignment:
| Q |
187 |
acaatacctgccacaagtactctcaaatcaatgaagtaac-atttagctactctggcagatttaacatgaattttcgaatagttt |
270 |
Q |
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|||||| |||| |||||||||||||||||||||||| ||| || ||||||| |||||||||||| ||||||||| ||||||||| |
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| T |
13454399 |
acaatatctgcgacaagtactctcaaatcaatgaagcaacaatatagctaccatggcagatttaatatgaatttttgaatagttt |
13454315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 13454249 - 13454185
Alignment:
| Q |
294 |
ttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttatttt-aatttttcaa |
357 |
Q |
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| T |
13454249 |
ttttgttgtgtacgtggttcttctaacttcttaatgtgttttcgcatttattttcaatttttcaa |
13454185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 28385071 - 28384975
Alignment:
| Q |
17 |
cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagc |
114 |
Q |
| |
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|||||||||||||||||| ||| | ||||||||| ||||||| ||| || | | |||||| ||||| |||||||||| |||| |||||||||||| |
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| T |
28385071 |
cttaaaagattgagagacagcaaaccacatgattaat-caaatgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtcaagc |
28384975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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