View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0867_low_30 (Length: 259)

Name: NF0867_low_30
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0867_low_30
NF0867_low_30
[»] chr6 (9 HSPs)
chr6 (61-259)||(30487501-30487699)
chr6 (214-259)||(14515476-14515521)
chr6 (213-259)||(19278233-19278279)
chr6 (213-259)||(31849112-31849158)
chr6 (213-258)||(4097710-4097755)
chr6 (214-255)||(9719034-9719075)
chr6 (214-259)||(9719226-9719271)
chr6 (214-259)||(9721141-9721186)
chr6 (214-258)||(30487309-30487353)
[»] chr8 (5 HSPs)
chr8 (214-259)||(31543268-31543313)
chr8 (214-259)||(30479913-30479958)
chr8 (214-255)||(43732682-43732723)
chr8 (214-259)||(43732883-43732928)
chr8 (214-258)||(8815338-8815382)
[»] chr4 (10 HSPs)
chr4 (213-259)||(46007897-46007943)
chr4 (214-259)||(49735688-49735733)
chr4 (214-259)||(54320630-54320675)
chr4 (214-258)||(7977694-7977738)
chr4 (214-258)||(49735471-49735515)
chr4 (214-258)||(56135752-56135796)
chr4 (214-259)||(21695084-21695129)
chr4 (214-259)||(31348517-31348562)
chr4 (214-259)||(37711319-37711364)
chr4 (214-259)||(54935265-54935310)
[»] chr7 (7 HSPs)
chr7 (214-255)||(25887195-25887236)
chr7 (214-259)||(39856061-39856106)
chr7 (214-259)||(47390858-47390903)
chr7 (214-258)||(37925844-37925888)
chr7 (214-256)||(36267752-36267794)
chr7 (217-259)||(40282203-40282245)
chr7 (212-249)||(31364250-31364287)
[»] chr5 (10 HSPs)
chr5 (214-259)||(13634714-13634759)
chr5 (214-259)||(14245242-14245287)
chr5 (214-259)||(16938482-16938527)
chr5 (215-259)||(2550548-2550592)
chr5 (214-256)||(13634910-13634952)
chr5 (214-259)||(1658009-1658054)
chr5 (214-259)||(11757099-11757144)
chr5 (214-255)||(14245091-14245132)
chr5 (214-259)||(26414896-26414941)
chr5 (216-256)||(11436944-11436984)
[»] chr2 (5 HSPs)
chr2 (214-259)||(17379849-17379894)
chr2 (214-255)||(36046401-36046442)
chr2 (214-256)||(35736178-35736220)
chr2 (214-258)||(22356201-22356245)
chr2 (214-258)||(23748292-23748336)
[»] chr1 (8 HSPs)
chr1 (214-259)||(35349658-35349703)
chr1 (214-256)||(26324017-26324059)
chr1 (213-259)||(38510090-38510136)
chr1 (214-259)||(12234206-12234251)
chr1 (214-259)||(20607413-20607458)
chr1 (214-255)||(30010335-30010376)
chr1 (214-259)||(41498407-41498452)
chr1 (214-258)||(38509897-38509941)
[»] chr3 (3 HSPs)
chr3 (214-259)||(24560220-24560265)
chr3 (214-259)||(41110517-41110562)
chr3 (227-259)||(26135993-26136025)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 61 - 259
Target Start/End: Complemental strand, 30487699 - 30487501
Alignment:
Q  61 ggattctcttcttcattctccatgggaagtcaagaaactttatggctatcagaaccatgaatttcagtttcattgtcatgtccaaatccaggtggggaac 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30487699 ggattctcttcttcattctccatgggaagtcaagaaactttatggctatcagaaccatgaatttcagtttcattgtcatgtccaaatccaggtggggaac 30487600  T
Q  161 ctgtcccaaagattaatatgctaccacgtggtggctgagagtaacacatgctagtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30487599 ctgtcccaaagattattatgctactacgtggtggctgagagtaacacatgctagtgtgtttcgattgagggtttaggaggggaagggagtggagggttt 30487501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 14515476 - 14515521
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  14515476 gtgtgtttggattgagggtttaggaggggaagggaggggagggttt 14515521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 19278279 - 19278233
Alignment:
Q  213 agtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    ||||||||| ||||||| ||||| ||||||||||||| |||||||||    
T  19278279 agtgtgtttggattgagagtttaggaggggaagggaggggagggttt 19278233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 31849112 - 31849158
Alignment:
Q  213 agtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    ||||||||  ||||||||||||| ||||||||||||| |||||||||    
T  31849112 agtgtgttaggattgagggtttaagaggggaagggaggggagggttt 31849158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 4097755 - 4097710
Alignment:
Q  213 agtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    ||||||||| ||||||||||||| ||||||||||||| | ||||||    
T  4097755 agtgtgtttggattgagggtttaagaggggaagggagggaagggtt 4097710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 9719034 - 9719075
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagg 255  Q
    |||||||| ||||||||||||| ||||||||||||| |||||    
T  9719034 gtgtgtttggattgagggtttaggaggggaagggaggggagg 9719075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 9719271 - 9719226
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||||||||||||| ||| || ||||||    
T  9719271 gtgtgtttggattgagggtttatgaggggaagagaggggtgggttt 9719226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 9721141 - 9721186
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| |||||| |||||| ||||||||||||| |||||||||    
T  9721141 gtgtgtttggattgaaggtttaggaggggaagggaggggagggttt 9721186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 30487309 - 30487353
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    |||||||| ||| ||||||||| ||||||||||||| ||||||||    
T  30487309 gtgtgtttggatggagggtttaggaggggaagggaggggagggtt 30487353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 31543313 - 31543268
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  31543313 gtgtgtttcgattgagggtttaggaggggaagggaggggagggttt 31543268  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 30479958 - 30479913
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||||||| |||| |||| |||||||||    
T  30479958 gtgtgtttggattgagggtttatgagaggaatggagcggagggttt 30479913  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 43732682 - 43732723
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagg 255  Q
    |||||||| ||||||||||||| ||||||||||||| |||||    
T  43732682 gtgtgtttggattgagggtttaggaggggaagggagaggagg 43732723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 43732928 - 43732883
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  43732928 gtgtgtttggatggagggtttaggaggggaagggaggggagggttt 43732883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 8815382 - 8815338
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    |||||||| ||||||||||||| |||||| |||||| ||||||||    
T  8815382 gtgtgtttggattgagggtttaggagggggagggaggggagggtt 8815338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 46007943 - 46007897
Alignment:
Q  213 agtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||||    
T  46007943 agtgtgtttggattgagggtttaggaggggaagggaggggagggttt 46007897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 49735733 - 49735688
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  49735733 gtgtgtttggattgagggtttaggaggggaagggaggggagggttt 49735688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 54320675 - 54320630
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  54320675 gtgtgtttggattgagggtttaggaggggaagggaggggagggttt 54320630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 7977738 - 7977694
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    |||||||| |||||||||||||||||||||| |||| ||||||||    
T  7977738 gtgtgtttggattgagggtttatgaggggaaaggaggggagggtt 7977694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 49735471 - 49735515
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||    
T  49735471 gtgtgtttggattgagggtttaggaggggaagggaggggagggtt 49735515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 56135752 - 56135796
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||    
T  56135752 gtgtgtttggattgagggtttaggaggggaagggaggggagggtt 56135796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 21695129 - 21695084
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||| |||||||||||||||||| || |||||||||    
T  21695129 gtgtgtttggattgggggtttatgaggggaaggaagcggagggttt 21695084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 31348562 - 31348517
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||| ||||| ||||||||||||| |||||||||    
T  31348562 gtgtgtttggattgagagtttaggaggggaagggaggggagggttt 31348517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 37711364 - 37711319
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  37711364 gtgtgtttggatggagggtttaggaggggaagggaggggagggttt 37711319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 54935310 - 54935265
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  54935310 gtgtgtttggatggagggtttaggaggggaagggaggggagggttt 54935265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 25887195 - 25887236
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagg 255  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  25887195 gtgtgtttggattgagggtttatgaggggaagggaggggagg 25887236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 39856106 - 39856061
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  39856106 gtgtgtttggattgagggtttaggaggggaagggaggggagggttt 39856061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 47390858 - 47390903
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||    
T  47390858 gtgtgtttggattgaggggttaggaggggaagggagtggagggttt 47390903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 37925844 - 37925888
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||    
T  37925844 gtgtgtttggattgagggtttaggaggggaagggaggggagggtt 37925888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 36267794 - 36267752
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggaggg 256  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||    
T  36267794 gtgtgtttggattgagggtttaggaggggaagggaggggaggg 36267752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 40282203 - 40282245
Alignment:
Q  217 tgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||    
T  40282203 tgtttggattgagggtttaggaggggaagggagaggagggttt 40282245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 31364287 - 31364250
Alignment:
Q  212 tagtgtgtttcgattgagggtttatgaggggaagggag 249  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  31364287 tagtgtgtttggattgagggtttaggaggggaagggag 31364250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 13634714 - 13634759
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  13634714 gtgtgtttggattgagggtttaggaggggaagggaggggagggttt 13634759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 14245287 - 14245242
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  14245287 gtgtgtttggattgagggtttaggaggggaagggaggggagggttt 14245242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 16938482 - 16938527
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  16938482 gtgtgtttggattgagggtttaggaggggaagggaggggagggttt 16938527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 2550592 - 2550548
Alignment:
Q  215 tgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||    
T  2550592 tgtgtttggattgagggtttaggaggggaagggaggggagggttt 2550548  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 13634952 - 13634910
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggaggg 256  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||    
T  13634952 gtgtgtttggattgagggtttaggaggggaagggaggggaggg 13634910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 1658054 - 1658009
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  1658054 gtgtgtttggatggagggtttaggaggggaagggaggggagggttt 1658009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 11757144 - 11757099
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  11757144 gtgtgtttggatggagggtttaagaggggaagggaggggagggttt 11757099  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 14245091 - 14245132
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagg 255  Q
    |||||||| ||||||||||||| ||||||||||||| |||||    
T  14245091 gtgtgtttggattgagggtttaggaggggaagggaggggagg 14245132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 26414896 - 26414941
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| |||| |||||||| |||||||||    
T  26414896 gtgtgtttggattgagggtttaggaggagaagggaggggagggttt 26414941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 11436944 - 11436984
Alignment:
Q  216 gtgtttcgattgagggtttatgaggggaagggagtggaggg 256  Q
    |||||| ||||||||||||| ||||||||||||| ||||||    
T  11436944 gtgtttggattgagggtttaggaggggaagggagaggaggg 11436984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 17379849 - 17379894
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  17379849 gtgtgtttggattgagggtttaggaggggaagggaggggagggttt 17379894  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 36046442 - 36046401
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagg 255  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  36046442 gtgtgtttggattgagggtttatgaggggaagggaggggagg 36046401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 35736178 - 35736220
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggaggg 256  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||    
T  35736178 gtgtgtttggattgagggtttaggaggggaagggaggggaggg 35736220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 22356245 - 22356201
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    |||||||| |||||||| |||| ||||||||||||| ||||||||    
T  22356245 gtgtgtttggattgaggatttaggaggggaagggaggggagggtt 22356201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 23748336 - 23748292
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    |||||||| ||| ||||||||| ||||||||||||| ||||||||    
T  23748336 gtgtgtttggatggagggtttaggaggggaagggaggggagggtt 23748292  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 35349703 - 35349658
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| |||| |||||||||||||||||||||| |||||||||    
T  35349703 gtgtgtttggattaagggtttatgaggggaagggaggggagggttt 35349658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 26324017 - 26324059
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggaggg 256  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||    
T  26324017 gtgtgtttggattgagggtttaggaggggaagggaggggaggg 26324059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 38510136 - 38510090
Alignment:
Q  213 agtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    ||||||||| |||| |||||||| ||||||||||||| |||||||||    
T  38510136 agtgtgtttggattaagggtttaggaggggaagggaggggagggttt 38510090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 12234251 - 12234206
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  12234251 gtgtgtttggatggagggtttaggaggggaagggaggggagggttt 12234206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 20607458 - 20607413
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||| ||||||||| ||||||||||||| |||||||||    
T  20607458 gtgtgtttggatggagggtttaggaggggaagggaggggagggttt 20607413  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 30010335 - 30010376
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagg 255  Q
    |||||||| ||||||||||||| ||||||||||||| |||||    
T  30010335 gtgtgtttggattgagggtttaggaggggaagggaggggagg 30010376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 41498407 - 41498452
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| ||||||||||||| ||||||||| ||| |||||||||    
T  41498407 gtgtgtttggattgagggtttaggaggggaagtgaggggagggttt 41498452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 38509897 - 38509941
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggtt 258  Q
    |||||||| ||| ||||||||| ||||||||||||| ||||||||    
T  38509897 gtgtgtttggatagagggtttaggaggggaagggagaggagggtt 38509941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 24560220 - 24560265
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| |||| |||||||| ||||||||||||| |||||||||    
T  24560220 gtgtgtttggattaagggtttaggaggggaagggaggggagggttt 24560265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 41110562 - 41110517
Alignment:
Q  214 gtgtgtttcgattgagggtttatgaggggaagggagtggagggttt 259  Q
    |||||||| |||||||||||| |||||||||||||| ||| |||||    
T  41110562 gtgtgtttggattgagggtttgtgaggggaagggagaggaaggttt 41110517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 26136025 - 26135993
Alignment:
Q  227 gagggtttatgaggggaagggagtggagggttt 259  Q
    ||||||||| |||||||||||||||||||||||    
T  26136025 gagggtttaggaggggaagggagtggagggttt 26135993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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