View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_low_6 (Length: 516)
Name: NF0867_low_6
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 6 - 516
Target Start/End: Complemental strand, 54635762 - 54635252
Alignment:
| Q |
6 |
ctccaagaatatcattaacatacaaaaagctaaaatatgagggaaaagcatgaggtaaattcacctgcttgtaagcccggacatttttacttctctttgg |
105 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54635762 |
ctccaataaaatcattaacatacaaaaagctaaaatatgagggaaaagcatgaggtaaattcacctgcttgtaagcccggacatttttacttctctttgg |
54635663 |
T |
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| Q |
106 |
cattgagtacaacattttaggacttttatctgcactaaaaggatcctgtccataaattctaaacaatggatgacaacccccttccccatcaaagtttggg |
205 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54635662 |
cattgagtacagcattttaggacttttatctgcactaaaaggatcctgtccataaattctaaacaatggatgacaaccaccttccccatcaaagtttggg |
54635563 |
T |
|
| Q |
206 |
aagaatctaagtataatacagtccaacatgagtgccctgtcgagcggaggccaatctaaggccacattcctcctagaaacatactgcagatacctcagtt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54635562 |
aagaatctaagtataatacagtccaacatgagtgccctgtcgagcggaggccaatctaaggccacattcctcctagaaacatactgcagatacctcagtt |
54635463 |
T |
|
| Q |
306 |
gggaaggaattggattcaacggcgtcaacaaatgtaaaagctggtgtggggactgccgataaatcatatccaaagtcctatgctcgccactataaacctt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54635462 |
gggaaggaattggattcaacggcgtcaacaaatgtaaaagctggtgtggggactgccgataaatcatatccaaagtcctatgctcgccactataaacctt |
54635363 |
T |
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| Q |
406 |
ccgataaatcaacaatgcagctaacatgaaagccataacgggccaaccaccacgttcacaatgcatcaacaacacattgtgttgaccaagagaaagccaa |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54635362 |
ccgataaatcaacaatgcagctaacatgaaagccataacgggccaaccaccacgttcacaatgcatcaacaacacattgtgttgaccaagtgaaagccaa |
54635263 |
T |
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| Q |
506 |
ctttcactaga |
516 |
Q |
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||||||||||| |
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| T |
54635262 |
ctttcactaga |
54635252 |
T |
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