View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0867_low_9 (Length: 459)
Name: NF0867_low_9
Description: NF0867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0867_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 4 - 293
Target Start/End: Complemental strand, 40547024 - 40546736
Alignment:
| Q |
4 |
tcttgatgatgaatgacttaattcctcttcatttcaatggccaacatttcttcctcccctacctcgtccatggatccacatttgttttgattcttgaatc |
103 |
Q |
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| T |
40547024 |
tcttgatgatgaatgacttaattcctcttcatttcaatggccaacatttcttcctcccctacctcgtccatggatccacatttgttttgattcttgaatc |
40546925 |
T |
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| Q |
104 |
ctctataattcttcgatgacaactttttattccactctactaacttcttgcacgcctactacatttcgaatgatataattcaaaaaggtgtaaaaacatg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
40546924 |
ctctataattcttcgatgacaactttttattccactctactaacttcttgcacgcctactacatttcgaatgatataattc-aaaaggtgtgaaaacatg |
40546826 |
T |
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| Q |
204 |
ttaaatattataattcgaattatttataaatgatgccaaaagaatttgtcttcttcaatatagccgagtcttgagaacttggtctagtgg |
293 |
Q |
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| T |
40546825 |
ttaaatattataattcgaattatttataaatgatgccaaaagaatttgtcttcttcaatatagccgagtcttgagaacttggtctagtgg |
40546736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 342 - 455
Target Start/End: Complemental strand, 40546686 - 40546573
Alignment:
| Q |
342 |
aattattcaatgatcatcaagtattgatcatttgatttgtcaaaggcacacacaacacaatccaacttaattaggattcaaagttctcttctccacgaac |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40546686 |
aattattcaatgatcatcaagtattgatcatttgatttgtcaaaggcacacacaacacaatccaacttaattaggattcaaagttctcttctccacgaac |
40546587 |
T |
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| Q |
442 |
atcctttgcttctc |
455 |
Q |
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| T |
40546586 |
atcttttgtttctc |
40546573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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