View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0869_high_3 (Length: 346)
Name: NF0869_high_3
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0869_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 169 - 337
Target Start/End: Complemental strand, 43533149 - 43532981
Alignment:
| Q |
169 |
gtcggttatatcagttgatccaacatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa |
268 |
Q |
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| T |
43533149 |
gtcggttatatcagttgatccaatatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa |
43533050 |
T |
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| Q |
269 |
atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataat |
337 |
Q |
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| T |
43533049 |
atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataat |
43532981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 43533351 - 43533211
Alignment:
| Q |
30 |
cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagtactccaaactgagcaagtaaaacacaacggnnnnn |
129 |
Q |
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| T |
43533351 |
cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatccaaacatgacgggtactccaaactgagcaagtaaaacacaacggaaaaa |
43533252 |
T |
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| Q |
130 |
nnncaatcacactcatgcatatacataaatt-atttgacag |
169 |
Q |
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| T |
43533251 |
aaacaatcacactcatgcatatacataaattaatttgacag |
43533211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 295
Target Start/End: Complemental strand, 43528863 - 43528739
Alignment:
| Q |
173 |
gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaaat |
270 |
Q |
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| T |
43528863 |
gttatatcagttgatccaacttgagtgttctgatgaagaccaacaatccttctctgaaacaagtagacagagcggtcacaatagcaaaacaagagaaaat |
43528764 |
T |
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| Q |
271 |
gctaaccaattttctgcatagagat |
295 |
Q |
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| T |
43528763 |
gccaaccaattttctgcatagagat |
43528739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 43529066 - 43528929
Alignment:
| Q |
30 |
cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgag--caagtaaaacacaacggn |
125 |
Q |
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| T |
43529066 |
cctgtggacgatgtatccagctctttctttgacaaagtaattgtaatcatcgaaacatgacgagtagtctccaaactgagcacaagtaaaacacaacg-- |
43528969 |
T |
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| Q |
126 |
nnnnnnncaatcacactcatgcatatacataaattatttgacag |
169 |
Q |
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| T |
43528968 |
----aaaaaatcatactcatgcatatacataaattatttgacag |
43528929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 43537751 - 43537658
Alignment:
| Q |
30 |
cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgagcaagtaaaacacaa |
121 |
Q |
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| T |
43537751 |
cctgtggaggatgtatccagctctttctttgacagcgtaattgtgatcattgaaacatgacgagtagtctccaaactgagcaagtaaaacacaa |
43537658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 43523308 - 43523220
Alignment:
| Q |
30 |
cctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgagcaagtaaaa |
116 |
Q |
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| T |
43523308 |
cctgtggaggatgtatccagctctttctttgacaaagtaattgtgatcattgaaacatgacgagtagtttccaaactgcgcaagtaaaa |
43523220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 43537549 - 43537478
Alignment:
| Q |
173 |
gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagag |
242 |
Q |
| |
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| T |
43537549 |
gttatatcagttgatccaatttgagtgttctgatgcagaccaacaatccttctctgaaacaagtagaaagag |
43537478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Complemental strand, 43528705 - 43528666
Alignment:
| Q |
294 |
attacagtcttatttattgcacgtcccattgctttgagaa |
333 |
Q |
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| T |
43528705 |
attacagtcttatttattgcacgtcccattgctttgagaa |
43528666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 43537391 - 43537355
Alignment:
| Q |
294 |
attacagtcttatttattgcacgtcccattgctttga |
330 |
Q |
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| T |
43537391 |
attacagtcttatttattgcacgtcccattgctttga |
43537355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 43522939 - 43522905
Alignment:
| Q |
297 |
acagtcttatttattgcacgtcccattgctttgag |
331 |
Q |
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| T |
43522939 |
acagtcttatttatcgcacgtcccattgctttgag |
43522905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 43523107 - 43523046
Alignment:
| Q |
173 |
gttatatcagttgatccaacatgagtgttctgatg--aacaaacaatccttctctgaaacaa |
232 |
Q |
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| T |
43523107 |
gttatatcagttgatccaataatagtgttctgatgcagaccaacaatccttctctgaaacaa |
43523046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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