View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0869_high_5 (Length: 248)
Name: NF0869_high_5
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0869_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2213412 - 2213646
Alignment:
| Q |
1 |
ccgttcttatttatttctttgtctcctatgttttcttttggtttttattgtctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgag |
100 |
Q |
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| T |
2213412 |
ccgttcttatttatttctttgtctcctatgttttcttttggtttttattgtctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgat |
2213511 |
T |
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| Q |
101 |
tgaaactctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctcttgtgctttcgcagtgctgttagtggacatccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2213512 |
tgaaactctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctcttgtgctttcgcagtgctgttagtggacatccct |
2213611 |
T |
|
| Q |
201 |
ggtcgccttgttatagtattccttttactagcttc |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2213612 |
ggtcgccttgttatagtattccttttactagcttc |
2213646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 2200761 - 2200932
Alignment:
| Q |
1 |
ccgttcttatttatttctttgtctcctatgttttcttttggtttttattgtctgtcagtagtccttgttgaatataaagggcaataagttg-----tttc |
95 |
Q |
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|||||||||||||||||| ||||| || ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2200761 |
ccgttcttatttatttctatgtcttctgtgttttcctttggttgttcttgtctgtcagtagtccttgttgaatataaagggcaataagttgtgttctttc |
2200860 |
T |
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| Q |
96 |
ttgagtgaaactctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctct |
167 |
Q |
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| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
2200861 |
tggattgaaactctgtttcatcttttgaatgtctactttctacggtgttctgcttctatgatttattgctct |
2200932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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