View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0869_low_1 (Length: 647)
Name: NF0869_low_1
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0869_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 35 - 632
Target Start/End: Original strand, 32983977 - 32984574
Alignment:
| Q |
35 |
aaaaattactaaggttacattgctttaaggaaatcaaatcaaattactagtacaatattttacacctactataagccctagtaagaatatatatcactat |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32983977 |
aaaaattactaaggttacattgctttaaggaaatcaaatcaaattactagtacaatattttacacctactataagccctagtaagaatatatatcactat |
32984076 |
T |
|
| Q |
135 |
ataagtagcacaagccattctcacattcccataacccaaattcaattttcaaagatgaagatgaatcacattattgttttcttttttgttctcctctcat |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32984077 |
ataagtagcacaagccattctcacattcccataacccaaattcaattttcaaagatgaagatgaatcacattattgttttcttttttgttctcctctcat |
32984176 |
T |
|
| Q |
235 |
catatacctcacatgtttcttcttctgccaatgatttctgtgtagcaaacttgctcaacaatccagacaccccttcaggctatccatgcaaatcaccaac |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32984177 |
catatacctcacatgtttcttcttctgccaatgatttctgtgtagcaaacttgctcaacaatccagacaccccttcaggctatccatgcaaatcaccaac |
32984276 |
T |
|
| Q |
335 |
agtggatgattttgtgttctctggctttgtacctggaaacttaatcaaagaatttaatgtaaaattaaccaaagtatctgtcattgaattaccaagtctc |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32984277 |
agtggatgattttgtgttctctggctttgtacctggaaacttaatcaacgaatttaatgtaaaattaaccaaagtatctgtcattgaattaccaagtctc |
32984376 |
T |
|
| Q |
435 |
aatggactcgatgtctctgcggcaagagtagacattggtgtaaatggatctgttccgatgcatactcatcccgatgcaactgaattactaatcatggttc |
534 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32984377 |
aatggactcgatgtctctgcggcaagagtagatattggtgtaaatggatctgttccgatgcatactcatcccgatgcaactgaattactaatcatggttc |
32984476 |
T |
|
| Q |
535 |
aaggtaaagttacagctggatttattaaccttacagaagtttttgtcaaagatcttaagcttggtgatattatggtttttcctaagggactaatgcat |
632 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32984477 |
aaggtaaagttacagctggatttattaaccttacagaagtttttgtcaaagatcttcagcttggtgatattatggtttttcctaagggactaatgcat |
32984574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 35 - 632
Target Start/End: Original strand, 6521074 - 6521677
Alignment:
| Q |
35 |
aaaaattactaaggttacattgctttaaggaaatcaaatcaaattactagtacaatattttacacctactataagc--cctagtaagaatatatatcact |
132 |
Q |
| |
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|||||||| |||||||| || ||||||||||| |||||||| |||||||||| ||| |||||||||||| |||| ||||| |||||||||| ||| |
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| T |
6521074 |
aaaaattattaaggttaagctgatttaaggaaatgaaatcaaaatactagtacagtatgttacacctactacaagctacctagcaagaatatatt--act |
6521171 |
T |
|
| Q |
133 |
atataagtagcacaagccattctcacattcccataacccaaattcaattttcaaagatgaagatgaatcacattattgttttcttttttgttctcctc-- |
230 |
Q |
| |
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||||||| |||| |||| | ||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
6521172 |
atataagcagcaaaagctaatctcacatttccataacacagattcaattttcaaagatgaagatgaatcacattattattttcttttttgctctcctcat |
6521271 |
T |
|
| Q |
231 |
----tcatcatatacctcacatgtttcttcttctgccaatgatttctgtgtagcaaacttgctcaacaatccagacaccccttcaggctatccatgcaaa |
326 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||| | | ||| | ||||||||||||||||||||||||||||||| |
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| T |
6521272 |
atcatcatcatacaccttccatgtttcttcttctgccaatgatttctgtgtagcaaacctacacaaaactccagacaccccttcaggctatccatgcaaa |
6521371 |
T |
|
| Q |
327 |
tcaccaacagtggatgattttgtgttctctggctttgtacctggaaacttaatcaaagaatttaatgtaaaattaaccaaagtatctgtcattgaattac |
426 |
Q |
| |
|
|||||||| ||| ||||||| ||||| |||||||||| |||||||| ||||| ||||| |||||||| |||||| |||||| ||| || | |||||||| |
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| T |
6521372 |
tcaccaacggtgaatgatttcgtgttatctggctttggacctggaagcttaaacaaagcttttaatgttaaattagccaaagcatcagtaactgaattac |
6521471 |
T |
|
| Q |
427 |
caagtctcaatggactcgatgtctctgcggcaagagtagacattggtgtaaatggatctgttccgatgcatactcatcccgatgcaactgaattactaat |
526 |
Q |
| |
|
|||||||||||||||| ||| | ||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
6521472 |
caagtctcaatggacttgatatatctgcagcaagagtagacattggtccaaatggatctgttccaatgcatactcatcctgatgcaactgaattactaat |
6521571 |
T |
|
| Q |
527 |
catggttcaaggtaaagttacagctggatttattaaccttacagaagtttttgtcaaagatcttaagcttggtgatattatggtttttcctaagggacta |
626 |
Q |
| |
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|||||||||||||| ||| || ||||||||||| |||||||||||||||| ||||||||||||||||| | |||||||||||||||||| || |||||| |
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| T |
6521572 |
catggttcaaggtagagtcactgctggatttatcaaccttacagaagtttatgtcaaagatcttaagcctactgatattatggtttttccaaaaggacta |
6521671 |
T |
|
| Q |
627 |
atgcat |
632 |
Q |
| |
|
||||| |
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| T |
6521672 |
ttgcat |
6521677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 557
Target Start/End: Complemental strand, 19144184 - 19144114
Alignment:
| Q |
487 |
ttccgatgcatactcatcccgatgcaactgaattactaatcatggttcaaggtaaagttacagctggattt |
557 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||| | || | ||||||||| || |||| ||||||||| |
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|
| T |
19144184 |
ttccaatgcatactcatcccgatgcaaccgaattattgatagtagttcaaggtgaaattactgctggattt |
19144114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 556
Target Start/End: Complemental strand, 7318428 - 7318322
Alignment:
| Q |
450 |
tctgcggcaagagtagacattggtgtaaatggatctgttccgatgcatactcatcccgatgcaactgaattactaatcatggttcaaggtaaagttacag |
549 |
Q |
| |
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||||| |||||| |||| |||||| |||||||| ||| || ||||| |||||||| ||||||||||||||||||||| | |||||||| || |||| | |
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| T |
7318428 |
tctgcagcaagaatagatattggtataaatggaagtgtaccaatgcacactcatcctgatgcaactgaattactaatcgttattcaaggtcaaattactg |
7318329 |
T |
|
| Q |
550 |
ctggatt |
556 |
Q |
| |
|
|||||| |
|
|
| T |
7318328 |
ttggatt |
7318322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 329
Target Start/End: Complemental strand, 7318592 - 7318561
Alignment:
| Q |
298 |
cagacaccccttcaggctatccatgcaaatca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
7318592 |
cagacaccccttcaggctatccatgcaaatca |
7318561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 7321892 - 7321925
Alignment:
| Q |
339 |
gatgattttgtgttctctggctttgtacctggaa |
372 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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|
| T |
7321892 |
gatgattttgtgttctctggctttgtacccggaa |
7321925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 2345571 - 2345522
Alignment:
| Q |
195 |
atgaatcacattattgttttcttttttgttctcctctcatcatatacctc |
244 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
2345571 |
atgattcacactattcttttcttttttgttcttctctcatcatatacctc |
2345522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 2345480 - 2345400
Alignment:
| Q |
301 |
acaccccttcaggctatccatgcaaatca---------ccaacagtggatgattttgtgttctctggctttgtacctggaa |
372 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
2345480 |
acaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctggcttagtacctggaa |
2345400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 561
Target Start/End: Complemental strand, 2345349 - 2345214
Alignment:
| Q |
423 |
ttaccaagtctcaatggactcgatgtctctgcggcaagagtagacattggtgtaaatggatctgttccgatgcatactcatcccgatgcaactgaattac |
522 |
Q |
| |
|
|||||| |||| |||||||| | | ||||||| ||||||| ||| ||||| |||||||| |||||| |||| |||||| |||||||||||||||| |
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|
| T |
2345349 |
ttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcat---gatgcaactgaattac |
2345253 |
T |
|
| Q |
523 |
taatcatggttcaaggtaaagttacagctggatttatta |
561 |
Q |
| |
|
| ||| | || ||||| || |||| || |||||||||| |
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|
| T |
2345252 |
ttatcgttgtcgaaggtcaaattactgccggatttatta |
2345214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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