View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0869_low_12 (Length: 283)
Name: NF0869_low_12
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0869_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 74 - 278
Target Start/End: Complemental strand, 4911580 - 4911376
Alignment:
Q |
74 |
tatgatatctatcacattatcttttttcttatctatttatctctcaaagtgtatacattatatgattgtgcatcaaacattttcgagaaacttattagta |
173 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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T |
4911580 |
tatgatatctatcacatcattttttttcttatctatttatctctcaaagtgtatacattatatgattgtacatcaaacattttcgagaaacttattagta |
4911481 |
T |
 |
Q |
174 |
tatataactttgatgatttccatcaaaagaatatacgaatacgaatatacatttaaataattggctcacgaaggagcaattgccaacaatttagaatttg |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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T |
4911480 |
tatataactttgatgatttccatcaaaagaatatacgaatacgaatatacatttaaataattggctaaagaaggagcaattgccaacaatttagaatttg |
4911381 |
T |
 |
Q |
274 |
tatgt |
278 |
Q |
|
|
||||| |
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|
T |
4911380 |
tatgt |
4911376 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 54677236 - 54677296
Alignment:
Q |
3 |
tcgagtgatatgaacaatgcataatatatgtaaggtt-aagattcaaactctggacaccac |
62 |
Q |
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|||| ||||||| |||||||||||||||||||||||| |||||||||||| || |||||| |
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|
T |
54677236 |
tcgattgatatggacaatgcataatatatgtaaggttcgagattcaaactccggccaccac |
54677296 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 37005562 - 37005533
Alignment:
Q |
10 |
atatgaacaatgcataatatatgtaaggtt |
39 |
Q |
|
|
|||||||||||||||||||||||||||||| |
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|
T |
37005562 |
atatgaacaatgcataatatatgtaaggtt |
37005533 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 32923245 - 32923217
Alignment:
Q |
11 |
tatgaacaatgcataatatatgtaaggtt |
39 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
32923245 |
tatgaacaatgcataatatatgtaaggtt |
32923217 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 3456866 - 3456835
Alignment:
Q |
8 |
tgatatgaacaatgcataatatatgtaaggtt |
39 |
Q |
|
|
|||||||||||||||||||||||||||||||| |
|
|
T |
3456866 |
tgatatgaacaatgcataatatatgtaaggtt |
3456835 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 3196576 - 3196607
Alignment:
Q |
8 |
tgatatgaacaatgcataatatatgtaaggtt |
39 |
Q |
|
|
|||||||||||||||||||||||||||||||| |
|
|
T |
3196576 |
tgatatgaacaatgcataatatatgtaaggtt |
3196607 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 32957585 - 32957557
Alignment:
Q |
11 |
tatgaacaatgcataatatatgtaaggtt |
39 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
32957585 |
tatgaacaatgcataatatatgtaaggtt |
32957557 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 44639660 - 44639698
Alignment:
Q |
11 |
tatgaacaatgcataatatatgtaaggttaagattcaaa |
49 |
Q |
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|
|||||||||| |||||||||||||||||| ||||||||| |
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|
T |
44639660 |
tatgaacaatacataatatatgtaaggttcagattcaaa |
44639698 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 9113247 - 9113301
Alignment:
Q |
224 |
atttaaataattggctcacgaaggagcaattgccaacaatttagaatttgtatgt |
278 |
Q |
|
|
|||||||||||| ||||| |||||||||||| ||||||| || ||||||||||| |
|
|
T |
9113247 |
atttaaataattagctcaacaaggagcaattgtcaacaatgtacaatttgtatgt |
9113301 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 23045209 - 23045237
Alignment:
Q |
10 |
atatgaacaatgcataatatatgtaaggt |
38 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
23045209 |
atatgaacaatgcataatatatgtaaggt |
23045237 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 26611085 - 26611057
Alignment:
Q |
8 |
tgatatgaacaatgcataatatatgtaag |
36 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
26611085 |
tgatatgaacaatgcataatatatgtaag |
26611057 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 12909208 - 12909180
Alignment:
Q |
11 |
tatgaacaatgcataatatatgtaaggtt |
39 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
12909208 |
tatgaacaatgcataatatatgtaaggtt |
12909180 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 4033436 - 4033464
Alignment:
Q |
8 |
tgatatgaacaatgcataatatatgtaag |
36 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
4033436 |
tgatatgaacaatgcataatatatgtaag |
4033464 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 28965819 - 28965791
Alignment:
Q |
11 |
tatgaacaatgcataatatatgtaaggtt |
39 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
28965819 |
tatgaacaatgcataatatatgtaaggtt |
28965791 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 29818007 - 29817959
Alignment:
Q |
8 |
tgatatgaacaatgcataatatatgtaaggttaagattcaaactctgga |
56 |
Q |
|
|
||||||||||||||||||| |||| ||| ||| || ||||||||||||| |
|
|
T |
29818007 |
tgatatgaacaatgcataaaatatataaagtttaggttcaaactctgga |
29817959 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 43630460 - 43630432
Alignment:
Q |
11 |
tatgaacaatgcataatatatgtaaggtt |
39 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
43630460 |
tatgaacaatgcataatatatgtaaggtt |
43630432 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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