View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0869_low_12 (Length: 283)

Name: NF0869_low_12
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0869_low_12
NF0869_low_12
[»] chr4 (4 HSPs)
chr4 (74-278)||(4911376-4911580)
chr4 (3-62)||(54677236-54677296)
chr4 (10-39)||(37005533-37005562)
chr4 (11-39)||(32923217-32923245)
[»] chr8 (1 HSPs)
chr8 (8-39)||(3456835-3456866)
[»] chr2 (2 HSPs)
chr2 (8-39)||(3196576-3196607)
chr2 (11-39)||(32957557-32957585)
[»] chr7 (1 HSPs)
chr7 (11-49)||(44639660-44639698)
[»] chr1 (2 HSPs)
chr1 (224-278)||(9113247-9113301)
chr1 (10-38)||(23045209-23045237)
[»] chr6 (1 HSPs)
chr6 (8-36)||(26611057-26611085)
[»] chr5 (1 HSPs)
chr5 (11-39)||(12909180-12909208)
[»] chr3 (4 HSPs)
chr3 (8-36)||(4033436-4033464)
chr3 (11-39)||(28965791-28965819)
chr3 (8-56)||(29817959-29818007)
chr3 (11-39)||(43630432-43630460)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 74 - 278
Target Start/End: Complemental strand, 4911580 - 4911376
Alignment:
74 tatgatatctatcacattatcttttttcttatctatttatctctcaaagtgtatacattatatgattgtgcatcaaacattttcgagaaacttattagta 173  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
4911580 tatgatatctatcacatcattttttttcttatctatttatctctcaaagtgtatacattatatgattgtacatcaaacattttcgagaaacttattagta 4911481  T
174 tatataactttgatgatttccatcaaaagaatatacgaatacgaatatacatttaaataattggctcacgaaggagcaattgccaacaatttagaatttg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
4911480 tatataactttgatgatttccatcaaaagaatatacgaatacgaatatacatttaaataattggctaaagaaggagcaattgccaacaatttagaatttg 4911381  T
274 tatgt 278  Q
    |||||    
4911380 tatgt 4911376  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 54677236 - 54677296
Alignment:
3 tcgagtgatatgaacaatgcataatatatgtaaggtt-aagattcaaactctggacaccac 62  Q
    |||| ||||||| ||||||||||||||||||||||||  |||||||||||| || ||||||    
54677236 tcgattgatatggacaatgcataatatatgtaaggttcgagattcaaactccggccaccac 54677296  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 37005562 - 37005533
Alignment:
10 atatgaacaatgcataatatatgtaaggtt 39  Q
    ||||||||||||||||||||||||||||||    
37005562 atatgaacaatgcataatatatgtaaggtt 37005533  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 32923245 - 32923217
Alignment:
11 tatgaacaatgcataatatatgtaaggtt 39  Q
    |||||||||||||||||||||||||||||    
32923245 tatgaacaatgcataatatatgtaaggtt 32923217  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 3456866 - 3456835
Alignment:
8 tgatatgaacaatgcataatatatgtaaggtt 39  Q
    ||||||||||||||||||||||||||||||||    
3456866 tgatatgaacaatgcataatatatgtaaggtt 3456835  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 3196576 - 3196607
Alignment:
8 tgatatgaacaatgcataatatatgtaaggtt 39  Q
    ||||||||||||||||||||||||||||||||    
3196576 tgatatgaacaatgcataatatatgtaaggtt 3196607  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 32957585 - 32957557
Alignment:
11 tatgaacaatgcataatatatgtaaggtt 39  Q
    |||||||||||||||||||||||||||||    
32957585 tatgaacaatgcataatatatgtaaggtt 32957557  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 44639660 - 44639698
Alignment:
11 tatgaacaatgcataatatatgtaaggttaagattcaaa 49  Q
    |||||||||| |||||||||||||||||| |||||||||    
44639660 tatgaacaatacataatatatgtaaggttcagattcaaa 44639698  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 9113247 - 9113301
Alignment:
224 atttaaataattggctcacgaaggagcaattgccaacaatttagaatttgtatgt 278  Q
    |||||||||||| |||||  |||||||||||| ||||||| || |||||||||||    
9113247 atttaaataattagctcaacaaggagcaattgtcaacaatgtacaatttgtatgt 9113301  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 23045209 - 23045237
Alignment:
10 atatgaacaatgcataatatatgtaaggt 38  Q
    |||||||||||||||||||||||||||||    
23045209 atatgaacaatgcataatatatgtaaggt 23045237  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 26611085 - 26611057
Alignment:
8 tgatatgaacaatgcataatatatgtaag 36  Q
    |||||||||||||||||||||||||||||    
26611085 tgatatgaacaatgcataatatatgtaag 26611057  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 12909208 - 12909180
Alignment:
11 tatgaacaatgcataatatatgtaaggtt 39  Q
    |||||||||||||||||||||||||||||    
12909208 tatgaacaatgcataatatatgtaaggtt 12909180  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 4033436 - 4033464
Alignment:
8 tgatatgaacaatgcataatatatgtaag 36  Q
    |||||||||||||||||||||||||||||    
4033436 tgatatgaacaatgcataatatatgtaag 4033464  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 28965819 - 28965791
Alignment:
11 tatgaacaatgcataatatatgtaaggtt 39  Q
    |||||||||||||||||||||||||||||    
28965819 tatgaacaatgcataatatatgtaaggtt 28965791  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 29818007 - 29817959
Alignment:
8 tgatatgaacaatgcataatatatgtaaggttaagattcaaactctgga 56  Q
    ||||||||||||||||||| |||| ||| ||| || |||||||||||||    
29818007 tgatatgaacaatgcataaaatatataaagtttaggttcaaactctgga 29817959  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 43630460 - 43630432
Alignment:
11 tatgaacaatgcataatatatgtaaggtt 39  Q
    |||||||||||||||||||||||||||||    
43630460 tatgaacaatgcataatatatgtaaggtt 43630432  T

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