View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0869_low_13 (Length: 249)
Name: NF0869_low_13
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0869_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 36359230 - 36359419
Alignment:
| Q |
1 |
agattatcaaatttatttatagtttaaacaaagtgtgtaatctaatataacaatat-----ggaagtaatgacacctatgattaattaccagtttaaagg |
95 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||| |
|
|
| T |
36359230 |
agattatcaaatttatttatagtttaaataaagtgtgtaatctaatataacaatataatatggaagtaaagatacctatgatta----ccagtttaaagg |
36359325 |
T |
|
| Q |
96 |
aaacttaattaaaaagtaaaatgaagacacctacaaagaatgtgagaataggctgagtcgaattagagtttgtcagcctcaaatctaatcttat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36359326 |
aaacttaattaaaaagtaaaatgaagacacctacaaagaatgtgagaataggctgagtcgaattagagtttgtcagcctcaaatctaatcttat |
36359419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 36358656 - 36358705
Alignment:
| Q |
140 |
agaataggctgagtcgaattagagtttgtcagcctcaaatctaatcttat |
189 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
36358656 |
agaataggttgagtcgaattagactttgtaagactcaagtctaatcttat |
36358705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2366 times since January 2019
Visitors: 6162