View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0869_low_15 (Length: 227)
Name: NF0869_low_15
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0869_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 36358959 - 36358814
Alignment:
| Q |
1 |
caaaatgaagtttaatttcattggtctattaattcgttttaaagatgtgacattttatttatttaaagatgtgaatatgaaatactaggtctttaattag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |
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| T |
36358959 |
caaaatgaagtttaatttcattggtctattaattcgttttaaagatatgacattttatttatttaaagatgtcaatataaaatactatgtctttaattag |
36358860 |
T |
|
| Q |
101 |
gctaatcaagtcatactatactttcaaaaaatctagatcttttctt |
146 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
36358859 |
gctaatcaggtcatactatactttcaaaaaatctagatcctttctt |
36358814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 36359651 - 36359528
Alignment:
| Q |
2 |
aaaatgaagtttaatttcattggtctattaattcgttttaaagatgtgacattttatttatttaaagatgtgaatatgaaatactaggtctttaattagg |
101 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||||||||||| || |||||||||||||||||||| |||| ||||| |||||||| ||||||||||||| |
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|
| T |
36359651 |
aaaacgaagtttaattttattggcctattaattcgttttaaaaatatgacattttatttatttaaaaatgtcaatataaaatactatgtctttaattagg |
36359552 |
T |
|
| Q |
102 |
ctaatcaagtcatactatactttc |
125 |
Q |
| |
|
|||| ||||||||||||||||||| |
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| T |
36359551 |
ctaaccaagtcatactatactttc |
36359528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41458515 - 41458481
Alignment:
| Q |
1 |
caaaatgaagtttaatttcattggtctattaattc |
35 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
41458515 |
caaaatgaagtttactttcattggtctattaattc |
41458481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 49308709 - 49308746
Alignment:
| Q |
2 |
aaaatgaagtttaatttcattggtctattaattcgttt |
39 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
49308709 |
aaaatgaagtttaatctcattggtctattaactcgttt |
49308746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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