View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0869_low_3 (Length: 527)
Name: NF0869_low_3
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0869_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 51196630 - 51196108
Alignment:
| Q |
1 |
ctaaattttaaaaatgcagcaactgtgttagtagagtaactaaataaacttcattcatccttttgttcatggattttaagattcatagtgtttctctttg |
100 |
Q |
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| T |
51196630 |
ctaaattttgaaaatgcagcaactgtgttagtagagtaactaaataaacttcattcatccttttgttcatggattttaagattcatagtgtttctctttg |
51196531 |
T |
|
| Q |
101 |
tatgttgttatggattaataaaaataattgcaagtgatgagaataaccataaccgttgatacaagagcataattaaccaactattcaaaaagtcaataaa |
200 |
Q |
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| T |
51196530 |
tatgttgttatggattaataacaataattgcaagtgatgagaataaccataaccgttgatacaagagcataattaaccaactattcaaaaagtcaataaa |
51196431 |
T |
|
| Q |
201 |
ttgatagtgtatttttctaaaaagtttgaacattctcctttcttcatttgtctcgttttattctcttcgaa---gcggtgttcagagtaaggnnnnnnnc |
297 |
Q |
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| T |
51196430 |
ttgatagtgtatttttctaaaaagtttgaacattctcctttcttcatttttctcgttttattcccttcgaagcggcggtgttcagagt-agggttttttc |
51196332 |
T |
|
| Q |
298 |
ttttaagatgtctaattgcatcgtctaaatttcaaactcacacaagtgatgataactggtgtattcatacgagggaggaagaagaaagggaaatgaattt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
51196331 |
ttttaagatgtctaattgcatcgtctaaatttcaaactcacacaagtgatgataaccggtgtattcatacgagggaggaagaagaaagagaaatcaattt |
51196232 |
T |
|
| Q |
398 |
taaatcaatttttgttaggttatgacggaaatctcgtagatcttttccattggaccaagagtaatcacgcaagtgaaagagagacacaacatcttcacca |
497 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |
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| T |
51196231 |
taaatcaatttttgttaggttatgagggaaatctcgtggatcttttacattggaccaaaagtaatcacgcaagtgagagagagacaagacatcttcacca |
51196132 |
T |
|
| Q |
498 |
aaaaccttaagacattaaatttat |
521 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
51196131 |
aaaaccttaagacattaaatttat |
51196108 |
T |
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