View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0869_low_4 (Length: 465)
Name: NF0869_low_4
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0869_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 259 - 450
Target Start/End: Complemental strand, 52740292 - 52740100
Alignment:
| Q |
259 |
atactgcagttgagattttgtttaatggtaatttaatttggatctttttctcacaccatatgcttatttgaatannnnnnnn-aatagtgacatcatgat |
357 |
Q |
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| T |
52740292 |
atactgcagttgagattttgtttaatggtaatttaatttggatctttttctcacaccatatgcttatttgaatttttttttttaatagtgacatcatgat |
52740193 |
T |
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| Q |
358 |
cttttcctataaaattatttctgaggattaagatatgtatatttggaattgattctacacgacgtctccaaatgacatatggtattcatcgat |
450 |
Q |
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| T |
52740192 |
cttttcctataaaattatttctgaggattaagatatgtatatttggaattgattctacacgacgtctccaaatgacatatggtattcatcgat |
52740100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 52740524 - 52740443
Alignment:
| Q |
29 |
aagcttgttgaaagggctgatgaacttgtcatgaagcaaagtgccatgccgtagaatagaattattagctatcgacgaagaa |
110 |
Q |
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| T |
52740524 |
aagcttgttgaaagggctgatgaacttgtcatgaagcaaagtgccatgccgtagaatagaattattagctatcgacgaagaa |
52740443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 45393943 - 45393871
Alignment:
| Q |
29 |
aagcttgttgaaagggctgatgaacttgtcatgaagcaaagtgccatgccgtagaatagaattattagctatc |
101 |
Q |
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| T |
45393943 |
aagcttgttgaaagggctgatgaacttgtcatgaagcaaagtgtcatgccctagaatagaattattagctatc |
45393871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 447
Target Start/End: Complemental strand, 45393676 - 45393585
Alignment:
| Q |
356 |
atcttttcctataaaattatttctgaggattaagatatgtatatttggaattgattctacacgacgtctccaaatgacatatggtattcatc |
447 |
Q |
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| T |
45393676 |
atcttttcctgtaaaattattaccgaggattaagatatgtatgtttcaaattgattttacttgacgtctctaaatgttttgtggtattcatc |
45393585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 35782578 - 35782629
Alignment:
| Q |
278 |
gtttaatggtaatttaatttggatctttttctcacaccatatgcttatttga |
329 |
Q |
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| T |
35782578 |
gtttaatggtaattttatttggatgtttttctcacaccatgtgcttatttga |
35782629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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