View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0869_low_5 (Length: 394)
Name: NF0869_low_5
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0869_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 31 - 379
Target Start/End: Complemental strand, 25476132 - 25475783
Alignment:
| Q |
31 |
tgttaccggtattgttcattcgtgcaatactattcacttgtgagtcactgttcaaaaaaatannnnnnnngtgaaaggnnnnnnnnngattatttactct |
130 |
Q |
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| T |
25476132 |
tgttaccggtactgttcattcgtgcaatactattcacttgtgagtcactgttcaaaaaaatattttttttgtgaaaggaaaaaaaa-gattatttactct |
25476034 |
T |
|
| Q |
131 |
agtttgaaacttattgtttcagagtattttt--gtctcttaagagccatatgatatcaatcaatatgacaaaagaagtaattattcaacccttctgtcaa |
228 |
Q |
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||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
25476033 |
ggtttgaaacttgttgtttcagagtttttttttgtctcttaagagccatatgatatcaatcaatatgtcaaaagaagtaattattcatcccttctgtcaa |
25475934 |
T |
|
| Q |
229 |
gatgaaataaactaggtgagaacttttcttcaggaattggataaaccaacatgtacatctatggcataagcattactagattaaattctttagataaatc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25475933 |
gatgaaataaactaggtgagaacttttcttcaggaattggataaaccaacatgtacatctatggcataagcattactagattaaattctttagataaatc |
25475834 |
T |
|
| Q |
329 |
gtataactattactagatactagattctggagccactgaccacatgacacc |
379 |
Q |
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| T |
25475833 |
gtataactattactagatactagattctggagccactgaccacatgacacc |
25475783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 50057685 - 50057803
Alignment:
| Q |
178 |
atgatatcaatcaatatgacaaaagaagtaattattcaacccttctgtcaagatgaaataaactaggtgagaacttttcttcaggaattggataaaccaa |
277 |
Q |
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| T |
50057685 |
atgacatcaatcaatatgtcaaaagaaggattgattcaacccttcagtgaagatgaaataaacaaggtaagatcttttcttaaggaattagataaaccaa |
50057784 |
T |
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| Q |
278 |
catgtacatctatggcata |
296 |
Q |
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| T |
50057785 |
gatgtacgtctctggcata |
50057803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 28095744 - 28095639
Alignment:
| Q |
183 |
atcaatcaatatgacaaaagaagtaattattcaacccttctgtcaagatgaaataaactaggtgagaacttttcttcaggaattggataaaccaacatgt |
282 |
Q |
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|||| |||||||| |||||| || ||| ||||||| |||| ||||||||||||||| |||||||| ||||||| || |||||||||||||||||||| |
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| T |
28095744 |
atcagtcaatatgtcaaaaggagaaatcattcaactcttcactcaagatgaaataaaaaaggtgagatcttttctcaagcaattggataaaccaacatgt |
28095645 |
T |
|
| Q |
283 |
acatct |
288 |
Q |
| |
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| |||| |
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| T |
28095644 |
aaatct |
28095639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 50057894 - 50057930
Alignment:
| Q |
344 |
gatactagattctggagccactgaccacatgacaccc |
380 |
Q |
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| T |
50057894 |
gatactagattctggagccactaaccacatgacaccc |
50057930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 10712436 - 10712553
Alignment:
| Q |
178 |
atgatatcaatcaatatgacaaaagaagtaattattcaacccttctgtcaagatgaaataaactaggtgagaacttttcttcaggaattggataaaccaa |
277 |
Q |
| |
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|||| ||||||||||||| ||||||||| | | |||||||||| |||||||||||||||| |||||||| |||||||| |||||||| ||||||||| |
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| T |
10712436 |
atgacatcaatcaatatgtcaaaagaaggattggttcaaccctttgatcaagatgaaataaacaaggtgagatcttttcttaaggaattgaataaaccaa |
10712535 |
T |
|
| Q |
278 |
catgtacatctatggcat |
295 |
Q |
| |
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|||||| |||||||||| |
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| T |
10712536 |
aatgtacgtctatggcat |
10712553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 1424709 - 1424745
Alignment:
| Q |
345 |
atactagattctggagccactgaccacatgacaccct |
381 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
1424709 |
atactggattctggagccactgaccacatgacaccct |
1424745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 1673935 - 1673846
Alignment:
| Q |
211 |
attcaacccttctgtcaagatgaaataaactaggtg----agaacttttcttcaggaattggataaaccaacatgtacatctatggcata |
296 |
Q |
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| T |
1673935 |
attcaacccttcagtcaagatgaaataaaaaaggtatgtaagatcttttcttaaggaattggataaaccaacatgtacgtctttggcata |
1673846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 3006879 - 3006907
Alignment:
| Q |
351 |
gattctggagccactgaccacatgacacc |
379 |
Q |
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| T |
3006879 |
gattctggagccactgaccacatgacacc |
3006907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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