View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0869_low_6 (Length: 348)

Name: NF0869_low_6
Description: NF0869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0869_low_6
NF0869_low_6
[»] chr7 (6 HSPs)
chr7 (57-228)||(21906759-21906930)
chr7 (166-232)||(30017471-30017537)
chr7 (177-226)||(31772105-31772154)
chr7 (173-230)||(45429313-45429370)
chr7 (166-225)||(18358786-18358845)
chr7 (172-228)||(28243159-28243215)
[»] chr5 (3 HSPs)
chr5 (228-269)||(29784816-29784857)
chr5 (57-91)||(29784937-29784971)
chr5 (172-228)||(14717337-14717393)
[»] chr6 (3 HSPs)
chr6 (154-224)||(24341474-24341543)
chr6 (144-225)||(33508658-33508739)
chr6 (173-230)||(26180604-26180661)
[»] chr3 (2 HSPs)
chr3 (144-225)||(35970409-35970490)
chr3 (166-228)||(8173125-8173187)
[»] chr4 (2 HSPs)
chr4 (172-228)||(31053041-31053097)
chr4 (162-228)||(10355230-10355296)
[»] chr8 (1 HSPs)
chr8 (166-225)||(10172473-10172532)
[»] chr1 (3 HSPs)
chr1 (202-233)||(52066867-52066898)
chr1 (202-232)||(16306515-16306545)
chr1 (166-223)||(16234083-16234140)
[»] chr2 (1 HSPs)
chr2 (173-223)||(24080357-24080407)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 21906930 - 21906759
Alignment:
Q  57 tcgaagaatatttgatgcacaagaggttagtaataattatgtgatttcacattttagcacaattgtatatttatgtataccaaaggatttaattaggata 156  Q
    ||||| ||||||||||||||||||||||| || ||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||    
T  21906930 tcgaaaaatatttgatgcacaagaggttattactaattatgtaatttcacatttgagcacaattgtatattgatgtataccaaaggatttaattagtata 21906831  T
Q  157 ctctctcattgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 228  Q
    |||| ||||||||||||||| ||||| ||||||| | |||||| ||   |||||||||||||||||||||||    
T  21906830 ctctatcattgtacgattatcttacacatgcatctaatgatactttactatgtcaattaatgaatatgaaaa 21906759  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 30017537 - 30017471
Alignment:
Q  166 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaataca 232  Q
    ||||| ||||||||||| |||||||||  ||| |||||||| |||||||||||||||| ||||||||    
T  30017537 tgtacaattattttacacatgcatccaacgatgcgttgtcacgtcaattaatgaatatcaaaataca 30017471  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 31772105 - 31772154
Alignment:
Q  177 tttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaa 226  Q
    |||||| ||||||||  ||||| |||||||||||||||||||||||||||    
T  31772105 tttacacatgcatcccgtgatatgttgtcatgtcaattaatgaatatgaa 31772154  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 45429370 - 45429313
Alignment:
Q  173 ttattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaata 230  Q
    |||||||||| ||||||| | ||||  |||| ||||||||||||||||||||||||||    
T  45429370 ttattttacacatgcatcaaatgatttgttgccatgtcaattaatgaatatgaaaata 45429313  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 18358786 - 18358845
Alignment:
Q  166 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatga 225  Q
    ||||| |||||||| || ||||||| | ||||  ||||||||||||||||||||||||||    
T  18358786 tgtaccattattttgcacatgcatcaaatgatgtgttgtcatgtcaattaatgaatatga 18358845  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 28243159 - 28243215
Alignment:
Q  172 attattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 228  Q
    ||||||||| | | ||||||| ||||  |||||||| ||||||||||||||||||||    
T  28243159 attattttaaacacgcatccaatgatgtgttgtcatatcaattaatgaatatgaaaa 28243215  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 29784857 - 29784816
Alignment:
Q  228 atacaaagtgtatatgaattaaatccacttaaattatgtatg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29784857 atacaaagtgtatatgaattaaatccacttaaattatgtatg 29784816  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 29784971 - 29784937
Alignment:
Q  57 tcgaagaatatttgatgcacaagaggttagtaata 91  Q
    ||||| |||||||||||||||||||||||||||||    
T  29784971 tcgaaaaatatttgatgcacaagaggttagtaata 29784937  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 14717393 - 14717337
Alignment:
Q  172 attattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 228  Q
    ||||||||||| ||||||| | ||||  |||||||  ||||||||||||||||||||    
T  14717393 attattttacacatgcatctaatgatgtgttgtcacatcaattaatgaatatgaaaa 14717337  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 24341543 - 24341474
Alignment:
Q  154 atactctctcattgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatg 224  Q
    ||||| ||||||||||| ||||||||||||||||||| | ||||| |||| |||||||||| |||||||||    
T  24341543 atactttctcattgtacaattattttacatatgcatctaatgatatgttgacatgtcaatt-atgaatatg 24341474  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 33508739 - 33508658
Alignment:
Q  144 tttaattaggatactctctcattgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatga 225  Q
    ||||||||| ||||||||||||||||| ||||||||||| || |||||| | ||   ||||| ||||||| |||||||||||    
T  33508739 tttaattagtatactctctcattgtacaattattttacacatacatccaattatgttttgtcgtgtcaatgaatgaatatga 33508658  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 26180604 - 26180661
Alignment:
Q  173 ttattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaata 230  Q
    |||||||||||||||||| | | ||  |||||||| || |||||||||||||||||||    
T  26180604 ttattttacatatgcatctaatcatgtgttgtcatatccattaatgaatatgaaaata 26180661  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 35970409 - 35970490
Alignment:
Q  144 tttaattaggatactctctcattgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatga 225  Q
    ||||||||| ||||||| | | |||| |||||||||||| |||||| || | ||  ||||||| ||||||||||||||||||    
T  35970409 tttaattagtatactctgtgagtgtatgattattttacacatgcattcaatcatgtgttgtcacgtcaattaatgaatatga 35970490  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 8173125 - 8173187
Alignment:
Q  166 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 228  Q
    ||||| ||||||||||||||| ||| | ||||| ||||||| || ||||||||||||| ||||    
T  8173125 tgtacaattattttacatatgtatctaatgatatgttgtcacgttaattaatgaatataaaaa 8173187  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 31053097 - 31053041
Alignment:
Q  172 attattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 228  Q
    ||||||||||| ||||||||| ||||  ||||||  |||||||||||||||||||||    
T  31053097 attattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatgaaaa 31053041  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 10355230 - 10355296
Alignment:
Q  162 tcattgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 228  Q
    ||||||| | |||||||||||||||||| || | ||   ||||||||||||||||||||||| ||||    
T  10355230 tcattgtccaattattttacatatgcattcaatcatgttttgtcatgtcaattaatgaatataaaaa 10355296  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 10172532 - 10172473
Alignment:
Q  166 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatga 225  Q
    ||||| ||||||||||| ||||||| | |||| |||||||| |||||||| |||||||||    
T  10172532 tgtacaattattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatga 10172473  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 233
Target Start/End: Complemental strand, 52066898 - 52066867
Alignment:
Q  202 tgtcatgtcaattaatgaatatgaaaatacaa 233  Q
    ||||||||||||||||||||||||||||||||    
T  52066898 tgtcatgtcaattaatgaatatgaaaatacaa 52066867  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 16306515 - 16306545
Alignment:
Q  202 tgtcatgtcaattaatgaatatgaaaataca 232  Q
    |||||||||||||||||||||||||||||||    
T  16306515 tgtcatgtcaattaatgaatatgaaaataca 16306545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 16234140 - 16234083
Alignment:
Q  166 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatat 223  Q
    ||||| |||||||||||||| |||||| |  |||||||||| |||||||||| |||||    
T  16234140 tgtacaattattttacatatacatccaatattacgttgtcaggtcaattaataaatat 16234083  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 24080357 - 24080407
Alignment:
Q  173 ttattttacatatgcatccactgatacgttgtcatgtcaattaatgaatat 223  Q
    |||||||||||||||||||| ||||  |||||||| |||||||||| ||||    
T  24080357 ttattttacatatgcatccaatgatgtgttgtcatctcaattaatggatat 24080407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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