View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0870_low_1 (Length: 535)
Name: NF0870_low_1
Description: NF0870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0870_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 265 - 526
Target Start/End: Complemental strand, 45240514 - 45240253
Alignment:
| Q |
265 |
ttcgaaacctaattagagatttcattcgctctcacgtgtaatttggtaacattatcatctattatttcattctttatttttaagnnnnnnnnnnnntggt |
364 |
Q |
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| T |
45240514 |
ttcgaaacctaattagagatttcattcgctctcacgtgtaatttggtaacattatcatctattatttcattctttatttttaagaaaaataaaaaatggt |
45240415 |
T |
|
| Q |
365 |
catatattatttttgaagaagaaaaatgatcataccttatcatcagttttcttaatttttgtaatttggcaacatggtcgtatatattaagggagggaag |
464 |
Q |
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| T |
45240414 |
catatattatttttgaagaagaaaaatgatcataccttatcatcagttttcttaatttttgtaatttggtaacatggtcgtatatattaagggaggaaag |
45240315 |
T |
|
| Q |
465 |
tagtatatcgtccattaaaccgtgtggttgagttgaaaggactgaacggtattctttctctg |
526 |
Q |
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| T |
45240314 |
tagtatatcatccattaaaccgtgtggttgagttgaaaggactgaacggtattctttctctg |
45240253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 369 - 523
Target Start/End: Complemental strand, 45233828 - 45233676
Alignment:
| Q |
369 |
tattatttttgaagaagaaaaatgatcataccttatcatcagttttcttaatttttgtaatttggcaacatggtcgtatatattaagggagggaagtagt |
468 |
Q |
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| T |
45233828 |
tattatttttgaagaagaaaaatgatcatatattatcatcagttttcttaattcttgtaatttggtaacatggtcgtatatattaagggaggaaagtagt |
45233729 |
T |
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| Q |
469 |
atatcgtccattaaaccgtgtggttgagttgaaaggactgaacggtattctttct |
523 |
Q |
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| T |
45233728 |
ttatcatccattcaacc--gtggttgagttgagaggactgaaccgtattctttct |
45233676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 45240604 - 45240543
Alignment:
| Q |
96 |
gtggagccacgacaatatacatacgatattgatgctcctagtgccacatccaaaattggacg |
157 |
Q |
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| T |
45240604 |
gtggagccacgacaatatacatacgatattgatgctcctagtgccacatccaaagttggacg |
45240543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 45233876 - 45233835
Alignment:
| Q |
281 |
agatttcattcgctctcacgtgtaatttggtaacattatcat |
322 |
Q |
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| T |
45233876 |
agatttcatttgctttcacctgtaatttggtaacattatcat |
45233835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 23869691 - 23869652
Alignment:
| Q |
100 |
agccacgacaatatacatacgatattgatgctcctagtgc |
139 |
Q |
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| T |
23869691 |
agccacgacaatatacatgcgatattgatgctcttagtgc |
23869652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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