View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0870_low_10 (Length: 251)

Name: NF0870_low_10
Description: NF0870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0870_low_10
NF0870_low_10
[»] chr8 (10 HSPs)
chr8 (11-251)||(13024743-13024983)
chr8 (37-158)||(18096646-18096767)
chr8 (34-99)||(12647160-12647225)
chr8 (40-99)||(12711786-12711845)
chr8 (34-103)||(12652270-12652339)
chr8 (31-91)||(12709892-12709952)
chr8 (34-97)||(6117901-6117964)
chr8 (37-107)||(18082280-18082350)
chr8 (40-97)||(12705780-12705837)
chr8 (40-89)||(22945459-22945508)
[»] chr4 (2 HSPs)
chr4 (37-158)||(37875592-37875713)
chr4 (34-82)||(20426643-20426691)
[»] chr2 (2 HSPs)
chr2 (34-101)||(44912518-44912585)
chr2 (34-88)||(44937794-44937848)
[»] chr1 (4 HSPs)
chr1 (30-88)||(19219179-19219237)
chr1 (30-88)||(19225436-19225494)
chr1 (40-81)||(22535211-22535252)
chr1 (29-149)||(17748092-17748211)
[»] chr3 (1 HSPs)
chr3 (31-88)||(2703738-2703795)
[»] chr7 (1 HSPs)
chr7 (30-102)||(6432600-6432672)
[»] chr5 (1 HSPs)
chr5 (25-101)||(42840501-42840577)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 13024743 - 13024983
Alignment:
Q  11 cagagataagaggacaagttaagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcaggtgt 110  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  13024743 cagagataagaggacaagttaagggtccaacaacaaagaatttagtccacgattctttgacaccgagttcacccaaaacccaaatgtgaaaatcaggcgt 13024842  T
Q  111 ctggttgtaattagtgatgtaagaaagagatccatttaattccaccaatcccattttcatccgtttatattttatatctgagttagagggtaatggtgtt 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13024843 ctggttgtaattagtgatgtaagaaagagatccatctaattccaccaatcccattttcatctgtttatattttatatctgagttagagggtaatggtgtt 13024942  T
Q  211 gcaacgaatgtctctttgctaaagtcaaacgacaccataac 251  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  13024943 gcaacgaatgtctctttggtaaagtcaaacaacaccataac 13024983  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 18096767 - 18096646
Alignment:
Q  37 ccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcaggtgtctggttgtaattagtgatgtaagaaa 136  Q
    |||||||||||||  || ||||| |||||||||||||| | |||||||||||||||||| ||||||||||| |||  || |||||||  ||||  |||||    
T  18096767 ccgacaacaaagagcttggtccatgattccttgacacccacttcacccaaaacccaaatatgaaaatcaggcgtcctgtcgtaattatagatgacagaaa 18096668  T
Q  137 gagatccatttaattccaccaa 158  Q
    ||||  ||||||| ||||||||    
T  18096667 gagactcatttaactccaccaa 18096646  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 12647225 - 12647160
Alignment:
Q  34 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtga 99  Q
    ||||| |||||||| | |||||||||||||||||| |||||  |||||||||||||||| ||||||    
T  12647225 ggtccaacaacaaaaagtttagtccacgattccttaacaccatgttcacccaaaacccatatgtga 12647160  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 12711786 - 12711845
Alignment:
Q  40 acaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtga 99  Q
    |||||||||| |||| |||||||||| || ||||||||||||||||||| ||| ||||||    
T  12711786 acaacaaagagtttaatccacgattctttaacaccgagttcacccaaaatccatatgtga 12711845  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 12652339 - 12652270
Alignment:
Q  34 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaat 103  Q
    ||||| |||||||||| |||||||||||||||||  ||||| | ||||||||||| | | ||||||||||    
T  12652339 ggtccaacaacaaagagtttagtccacgattcctcaacaccaatttcacccaaaatcgatatgtgaaaat 12652270  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 12709892 - 12709952
Alignment:
Q  31 aagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaaccc 91  Q
    |||||||| | ||| ||||||||||||||||||||||||||||  | || |||||||||||    
T  12709892 aagggtccaagaacgaagaatttagtccacgattccttgacactaatttaacccaaaaccc 12709952  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 6117964 - 6117901
Alignment:
Q  34 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgt 97  Q
    ||||| |||||||||| |||| |||||||||| || ||||| ||||||||||||| ||| ||||    
T  6117964 ggtccaacaacaaagagtttaatccacgattctttaacaccaagttcacccaaaatccatatgt 6117901  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 18082350 - 18082280
Alignment:
Q  37 ccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcagg 107  Q
    ||||||| |||||  || ||||| |||||||| ||||| | |||| ||||||||||||| |||||||||||    
T  18082350 ccgacaataaagagcttggtccatgattcctttacacccacttcatccaaaacccaaatatgaaaatcagg 18082280  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 12705837 - 12705780
Alignment:
Q  40 acaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgt 97  Q
    |||||||||| |||| |||||||||| || ||||||| ||||||||||| ||| ||||    
T  12705837 acaacaaagagtttaatccacgattctttaacaccgacttcacccaaaatccatatgt 12705780  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 22945508 - 22945459
Alignment:
Q  40 acaacaaagaatttagtccacgattccttgacaccgagttcacccaaaac 89  Q
    |||||||| |||||||||||||||||| | | |||||||||||| |||||    
T  22945508 acaacaaacaatttagtccacgattccatcaaaccgagttcacctaaaac 22945459  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 37875713 - 37875592
Alignment:
Q  37 ccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcaggtgtctggttgtaattagtgatgtaagaaa 136  Q
    |||||||||||||  || ||||| |||||||| | ||| | ||||||||||||||| || ||||||||||| |||  || |||||||  ||||  |||||    
T  37875713 ccgacaacaaagagattggtccatgattccttaatacccacttcacccaaaacccagatatgaaaatcaggcgtcatgtcgtaattatagatgacagaaa 37875614  T
Q  137 gagatccatttaattccaccaa 158  Q
    ||||  ||||||| ||||||||    
T  37875613 gagactcatttaactccaccaa 37875592  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 20426691 - 20426643
Alignment:
Q  34 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcac 82  Q
    ||||| |||||||||| ||| |||||||||||||| || ||||||||||    
T  20426691 ggtccaacaacaaagagtttggtccacgattccttcacgccgagttcac 20426643  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 44912518 - 44912585
Alignment:
Q  34 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaa 101  Q
    ||||| |||||||||| |||||| ||||||||||| ||||| ||||||||||||| | | ||||||||    
T  44912518 ggtccaacaacaaagagtttagttcacgattccttcacaccaagttcacccaaaatcgatatgtgaaa 44912585  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 44937794 - 44937848
Alignment:
Q  34 ggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaa 88  Q
    ||||| |||||||||| ||||||||| ||||| || || ||||||||||||||||    
T  44937794 ggtccaacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaa 44937848  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 19219179 - 19219237
Alignment:
Q  30 taagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaa 88  Q
    ||||||||| ||| | ||||  |||||||| ||||||||||||||||||||||||||||    
T  19219179 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagttcacccaaaa 19219237  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 19225436 - 19225494
Alignment:
Q  30 taagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaa 88  Q
    ||||||||| ||| | ||||  |||||||| ||||||||||||||||| ||||||||||    
T  19225436 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagctcacccaaaa 19225494  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 22535211 - 22535252
Alignment:
Q  40 acaacaaagaatttagtccacgattccttgacaccgagttca 81  Q
    |||||||||| ||||| ||||||||||| |||||||||||||    
T  22535211 acaacaaagagtttagcccacgattcctcgacaccgagttca 22535252  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 17748211 - 17748092
Alignment:
Q  29 ttaagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaatcaggtgtctggttgtaattagtgat 128  Q
    |||| ||||| ||||| || | ||||||||| ||||||||||||| ||||| |||| ||| | | |||||||||| || ||||| ||  ||||||| |||    
T  17748211 ttaatggtccaacaacgaaaactttagtccatgattccttgacacagagttgaccc-aaatctatatgtgaaaataagttgtcttgtaataattagagat 17748113  T
Q  129 gtaagaaagagatccatttaa 149  Q
    |  ||||| ||| ||||||||    
T  17748112 gagagaaacagacccatttaa 17748092  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 2703795 - 2703738
Alignment:
Q  31 aagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaa 88  Q
    |||||| | ||| |||||| |||| |||| |||||||||||||| |||||||||||||    
T  2703795 aagggttcaacatcaaagagtttaatccatgattccttgacaccaagttcacccaaaa 2703738  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 6432672 - 6432600
Alignment:
Q  30 taagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaaa 102  Q
    ||||||||||||||  |||| ||| ||||| ||||| |||||||| ||||||| ||||||  | |||||||||    
T  6432672 taagggtccgacaatgaagagtttggtccatgattctttgacaccaagttcacacaaaacatatatgtgaaaa 6432600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 42840501 - 42840577
Alignment:
Q  25 caagttaagggtccgacaacaaagaatttagtccacgattccttgacaccgagttcacccaaaacccaaatgtgaaa 101  Q
    |||| |||||| || |||| ||||| ||||||||| ||||| || ||||| |||||||||||||   ||||||||||    
T  42840501 caaggtaagggaccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaa 42840577  T

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