View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0870_low_3 (Length: 394)
Name: NF0870_low_3
Description: NF0870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0870_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 157 - 379
Target Start/End: Original strand, 36763574 - 36763797
Alignment:
| Q |
157 |
gttgtacaaatataatttctcatagaattattagccgttcttgtttgctttggtggctttgggtgtttggggattttggttcattctgtcacgagttttt |
256 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
36763574 |
gttgtacaaatatcatttctcatagaattattagtcgttcttgtttgctttggtggctttgggtgtttggggattttggttcgttctgtcatgagttttt |
36763673 |
T |
|
| Q |
257 |
tgagtgatctgtgagcttt-agagctgcgatcataccggtattaatgcatcaaattttattagaactccgcatttaagcgtatttagacaacatgtagta |
355 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36763674 |
tgagtgatctgtgagcttttagagctgcgatcataccggtattaatgcatcaaattttattagaactccgcatttaagcgtatttagacaacatgtagta |
36763773 |
T |
|
| Q |
356 |
atatggaaaccttttgataagtct |
379 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
36763774 |
atatggaaaccttttgataagtct |
36763797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36763417 - 36763453
Alignment:
| Q |
1 |
tattcgaacaaccatttgttaacaatttttatgacaa |
37 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
36763417 |
tatttgaacaaccatttgttaacaatttttatgacaa |
36763453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38844688 - 38844724
Alignment:
| Q |
1 |
tattcgaacaaccatttgttaacaatttttatgacaa |
37 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
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|
| T |
38844688 |
tatttgaacaaccatttgttaacaatttttatgacaa |
38844724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37392025 - 37392061
Alignment:
| Q |
1 |
tattcgaacaaccatttgttaacaatttttatgacaa |
37 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||| |
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| T |
37392025 |
tatttgaacaaccatttgttaacaatttttttgacaa |
37392061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40077429 - 40077388
Alignment:
| Q |
1 |
tattcgaacaaccatttgttaacaatttttatgacaatctcc |
42 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||| |||| |
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|
| T |
40077429 |
tatttgaacaaccatttgttaacaacttttatgacaacctcc |
40077388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44272709 - 44272750
Alignment:
| Q |
1 |
tattcgaacaaccatttgttaacaatttttatgacaatctcc |
42 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
44272709 |
tatttgaacaaccatttgctaacaattttgatgacaatctcc |
44272750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18272516 - 18272476
Alignment:
| Q |
1 |
tattcgaacaaccatttgttaacaatttttatgacaatctc |
41 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||||||||||| |
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|
| T |
18272516 |
tatttgaacaatcatttgctaacaatttttatgacaatctc |
18272476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19824131 - 19824171
Alignment:
| Q |
1 |
tattcgaacaaccatttgttaacaatttttatgacaatctc |
41 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||||| |
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|
| T |
19824131 |
tatttgaacaaccatttgttaacaacttctatgacaatctc |
19824171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17526594 - 17526554
Alignment:
| Q |
1 |
tattcgaacaaccatttgttaacaatttttatgacaatctc |
41 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||||||||||| |
|
|
| T |
17526594 |
tatttgaacaatcatttgctaacaatttttatgacaatctc |
17526554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32939179 - 32939219
Alignment:
| Q |
1 |
tattcgaacaaccatttgttaacaatttttatgacaatctc |
41 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||| |
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|
| T |
32939179 |
tatttgaacaaccatttgctaacaacttttatgacaatctc |
32939219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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