View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0870_low_8 (Length: 257)
Name: NF0870_low_8
Description: NF0870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0870_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 45239835 - 45240081
Alignment:
| Q |
11 |
cagagatatgaatacgatttagttgatgattttagcactcttttagttttagatgaaagttcactataatgtataaaattgaaattattgatgagaaaaa |
110 |
Q |
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| T |
45239835 |
cagagatatgaatacgatttagttgatgattttagcactcttttagttttagatgaaagttcgctataatgtatcaaattcaaattattgatgagaaaaa |
45239934 |
T |
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| Q |
111 |
tattggttaagatcataatagttaagatcatattagcctaactctgaagcagctttgtaaataaattgattcccttcaactgaaagaaagtagatgatac |
210 |
Q |
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| T |
45239935 |
tattggttaagatcataatagttaagatcatattagcctaactctgaagcagctttgtaaataaattgattcccttcaactgaaagaaagtagatgatac |
45240034 |
T |
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| Q |
211 |
tattaatcagaaatcacagcaaaatcatacaactattttagttacat |
257 |
Q |
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| T |
45240035 |
tattaatcagaaatcacaacaaaatcatacaactattttagttacat |
45240081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 45232710 - 45232791
Alignment:
| Q |
157 |
aagcagctttgtaaataaattgattcccttcaactgaaagaaagtagatgatactattaatcagaaatcacagcaaaatcat |
238 |
Q |
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| T |
45232710 |
aagcagctttgtaaatgaattgattcccttcaacagaaagaaagtagatggtactattaatcagacatcacagcaagatcat |
45232791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 7832687 - 7832798
Alignment:
| Q |
11 |
cagagatatgaatacgatttagttgatgattttag-cactcttttagttttagatgaaagttcactataatgtataaaattgaaattattgatgagaaaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
7832687 |
cagagatatgaatacgatttagttgatgattttagtcactctttt------agatgaaagttcactgtaatgtatcaaattaaaattattgatgagaaaa |
7832780 |
T |
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| Q |
110 |
atattggttaagatcata |
127 |
Q |
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| T |
7832781 |
atattggttaaaatcata |
7832798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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