View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0871_low_2 (Length: 408)

Name: NF0871_low_2
Description: NF0871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0871_low_2
NF0871_low_2
[»] chr7 (20 HSPs)
chr7 (230-388)||(16709803-16709964)
chr7 (230-388)||(17684039-17684200)
chr7 (226-397)||(43172322-43172496)
chr7 (30-158)||(21486629-21486757)
chr7 (30-158)||(23017476-23017604)
chr7 (226-397)||(23017255-23017414)
chr7 (226-400)||(21486404-21486566)
chr7 (30-158)||(31445837-31445964)
chr7 (231-397)||(5771789-5771958)
chr7 (56-158)||(42611004-42611109)
chr7 (30-127)||(43172599-43172696)
chr7 (48-139)||(37915597-37915688)
chr7 (30-100)||(16710072-16710142)
chr7 (30-100)||(17684308-17684378)
chr7 (73-131)||(42043821-42043879)
chr7 (227-265)||(42610903-42610941)
chr7 (30-111)||(5771662-5771743)
chr7 (326-390)||(27149110-27149174)
chr7 (48-135)||(14741925-14742012)
chr7 (74-135)||(4639440-4639501)
[»] chr6 (16 HSPs)
chr6 (226-385)||(2607176-2607338)
chr6 (30-156)||(31975234-31975360)
chr6 (226-385)||(16438970-16439131)
chr6 (226-385)||(33640943-33641104)
chr6 (226-378)||(24194747-24194902)
chr6 (30-150)||(31534587-31534707)
chr6 (226-379)||(28900501-28900661)
chr6 (271-397)||(31975358-31975484)
chr6 (72-158)||(2607400-2607486)
chr6 (30-124)||(16439218-16439312)
chr6 (297-389)||(31534827-31534919)
chr6 (73-158)||(24195541-24195626)
chr6 (60-124)||(28900350-28900414)
chr6 (73-140)||(15381129-15381196)
chr6 (30-114)||(32567808-32567892)
chr6 (30-91)||(2607490-2607551)
[»] chr2 (19 HSPs)
chr2 (226-397)||(31846837-31847011)
chr2 (226-397)||(38295393-38295568)
chr2 (30-158)||(38295215-38295343)
chr2 (226-401)||(40829886-40830063)
chr2 (226-397)||(34342500-34342674)
chr2 (30-158)||(9731436-9731564)
chr2 (30-158)||(40830125-40830252)
chr2 (30-162)||(2308034-2308166)
chr2 (30-158)||(42242291-42242419)
chr2 (30-158)||(34342736-34342865)
chr2 (48-158)||(31846665-31846775)
chr2 (30-124)||(18727098-18727192)
chr2 (30-140)||(30850867-30850977)
chr2 (226-327)||(9731271-9731375)
chr2 (226-395)||(18727312-18727484)
chr2 (30-122)||(2103795-2103886)
chr2 (48-135)||(18899443-18899530)
chr2 (48-102)||(37654895-37654949)
chr2 (345-397)||(35404098-35404150)
[»] chr4 (27 HSPs)
chr4 (226-386)||(32890144-32890306)
chr4 (226-397)||(24966162-24966336)
chr4 (30-157)||(32890370-32890497)
chr4 (226-397)||(46286967-46287141)
chr4 (30-157)||(29509542-29509669)
chr4 (226-390)||(33139058-33139225)
chr4 (30-158)||(46862425-46862553)
chr4 (30-158)||(24965971-24966100)
chr4 (230-386)||(29509736-29509894)
chr4 (30-158)||(12754801-12754927)
chr4 (53-158)||(33139288-33139393)
chr4 (251-397)||(53574002-53574150)
chr4 (288-379)||(46862666-46862757)
chr4 (30-141)||(26955760-26955871)
chr4 (34-135)||(14334828-14334929)
chr4 (30-151)||(35517998-35518119)
chr4 (56-158)||(26490785-26490884)
chr4 (54-127)||(50517617-50517690)
chr4 (288-342)||(35518229-35518283)
chr4 (326-368)||(17503527-17503569)
chr4 (73-134)||(41206942-41207003)
chr4 (226-278)||(50517490-50517545)
chr4 (30-122)||(22480157-22480248)
chr4 (48-135)||(29469637-29469724)
chr4 (226-265)||(35518179-35518218)
chr4 (74-135)||(8084665-8084726)
chr4 (329-397)||(55165791-55165858)
[»] chr1 (36 HSPs)
chr1 (226-389)||(32759771-32759937)
chr1 (226-397)||(47371239-47371413)
chr1 (226-388)||(49236667-49236832)
chr1 (46-158)||(47371065-47371177)
chr1 (30-158)||(49452540-49452668)
chr1 (229-379)||(42304054-42304207)
chr1 (226-397)||(3593493-3593667)
chr1 (229-358)||(35176941-35177073)
chr1 (30-136)||(32759560-32759666)
chr1 (30-158)||(49236477-49236605)
chr1 (226-390)||(25253791-25253958)
chr1 (297-390)||(48966234-48966327)
chr1 (67-158)||(28403495-28403586)
chr1 (30-157)||(48965996-48966116)
chr1 (30-158)||(3593729-3593857)
chr1 (226-385)||(49452729-49452884)
chr1 (63-158)||(25254023-25254118)
chr1 (30-133)||(35176755-35176858)
chr1 (30-140)||(2292753-2292863)
chr1 (34-141)||(8122461-8122565)
chr1 (288-397)||(28403700-28403809)
chr1 (30-133)||(15927574-15927676)
chr1 (31-116)||(19863426-19863511)
chr1 (58-124)||(42303897-42303963)
chr1 (81-158)||(19863350-19863427)
chr1 (30-81)||(28403430-28403481)
chr1 (226-265)||(48966175-48966214)
chr1 (48-134)||(5208813-5208899)
chr1 (226-262)||(28403650-28403686)
chr1 (51-135)||(41353915-41353999)
chr1 (48-135)||(1242821-1242908)
chr1 (48-135)||(11578640-11578727)
chr1 (59-132)||(226416-226488)
chr1 (74-135)||(8147836-8147897)
chr1 (74-135)||(26758110-26758171)
chr1 (59-131)||(21447210-21447281)
[»] chr8 (39 HSPs)
chr8 (226-401)||(12522075-12522253)
chr8 (226-386)||(42423473-42423635)
chr8 (30-158)||(8029334-8029461)
chr8 (46-157)||(12521901-12522012)
chr8 (46-157)||(42423699-42423810)
chr8 (46-158)||(27974462-27974575)
chr8 (46-158)||(28031731-28031844)
chr8 (226-385)||(27878281-27878443)
chr8 (226-385)||(28018462-28018624)
chr8 (30-136)||(3007300-3007406)
chr8 (30-158)||(27869417-27869545)
chr8 (30-158)||(12737564-12737691)
chr8 (30-158)||(44977223-44977351)
chr8 (226-380)||(27915225-27915382)
chr8 (226-380)||(27961644-27961801)
chr8 (30-158)||(6387381-6387509)
chr8 (297-401)||(41394193-41394296)
chr8 (226-345)||(12737753-12737875)
chr8 (233-379)||(6387775-6387924)
chr8 (46-158)||(41394356-41394468)
chr8 (226-394)||(44976991-44977161)
chr8 (288-397)||(8029571-8029680)
chr8 (32-124)||(18984857-18984949)
chr8 (299-397)||(27974734-27974831)
chr8 (299-397)||(28032003-28032100)
chr8 (226-323)||(27974637-27974737)
chr8 (226-323)||(28031906-28032006)
chr8 (30-124)||(24082716-24082810)
chr8 (83-158)||(27878144-27878219)
chr8 (83-158)||(28018325-28018400)
chr8 (226-291)||(27869609-27869677)
chr8 (83-158)||(27915088-27915163)
chr8 (83-158)||(27961507-27961582)
chr8 (73-133)||(35446968-35447028)
chr8 (315-386)||(24082472-24082543)
chr8 (30-87)||(27876573-27876630)
chr8 (30-87)||(28016754-28016811)
chr8 (51-135)||(19484687-19484771)
chr8 (297-370)||(3007538-3007611)
[»] scaffold0013 (2 HSPs)
scaffold0013 (226-397)||(89540-89714)
scaffold0013 (30-158)||(89777-89905)
[»] chr3 (19 HSPs)
chr3 (30-158)||(21385968-21386096)
chr3 (226-389)||(49458635-49458796)
chr3 (30-158)||(49458858-49458986)
chr3 (229-397)||(43173159-43173330)
chr3 (226-378)||(4962380-4962535)
chr3 (273-397)||(16155405-16155529)
chr3 (226-390)||(33693529-33693696)
chr3 (30-158)||(33693758-33693889)
chr3 (30-158)||(4962190-4962318)
chr3 (226-397)||(21386158-21386332)
chr3 (30-124)||(7437038-7437132)
chr3 (46-140)||(1666391-1666485)
chr3 (226-397)||(7437218-7437381)
chr3 (48-127)||(43173417-43173496)
chr3 (326-389)||(7667173-7667236)
chr3 (30-102)||(32766503-32766575)
chr3 (48-135)||(49296588-49296675)
chr3 (48-135)||(53836432-53836519)
chr3 (126-158)||(7437125-7437157)
[»] chr5 (11 HSPs)
chr5 (229-397)||(34218688-34218858)
chr5 (30-158)||(29716383-29716509)
chr5 (226-335)||(29716571-29716683)
chr5 (30-140)||(15286001-15286111)
chr5 (48-135)||(37797658-37797745)
chr5 (49-135)||(5650317-5650403)
chr5 (75-131)||(4841032-4841090)
chr5 (73-127)||(35701748-35701801)
chr5 (55-136)||(21490108-21490189)
chr5 (74-135)||(28622734-28622795)
chr5 (30-102)||(3032651-3032723)
[»] scaffold0573 (2 HSPs)
scaffold0573 (226-379)||(9133-9293)
scaffold0573 (60-124)||(9380-9444)
[»] scaffold0037 (1 HSPs)
scaffold0037 (335-390)||(36965-37020)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 230 - 388
Target Start/End: Complemental strand, 16709964 - 16709803
Alignment:
Q  230 agttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgca 326  Q
    ||||||||| ||||||||||||||||||| ||||||   ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16709964 agttaatttcttcaaaaggtcaacaaacatcaccaccgcaaccctaactggtgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgca 16709865  T
Q  327 accctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaa 388  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  16709864 accctaactggtatgtgctcccctgttcatggtttgagaactcagagaagaaagaaaaagaa 16709803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 230 - 388
Target Start/End: Complemental strand, 17684200 - 17684039
Alignment:
Q  230 agttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgca 326  Q
    ||||||||| ||||||||||||||||||| ||||||   ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17684200 agttaatttcttcaaaaggtcaacaaacatcaccaccgcaaccctaactggtgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgca 17684101  T
Q  327 accctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaa 388  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  17684100 accctaactggtatgtgctcccctgttcatggtttgagaactcagagaagaaagaaaaagaa 17684039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 226 - 397
Target Start/End: Complemental strand, 43172496 - 43172322
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||| ||||||||||   |||||||||||| |||||||||| || ||| |||||||||||||||| |||| ||||    
T  43172496 aactagttaatttcttcaaaaggtcaacagacaccaccaccgcaaccctaaccggtgtcgcaatcatcggcgtcgaaatctgaatttccatcgtcagaat 43172397  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  43172396 cgcaaccctaactggtatgtgctcccctattcatggattgagaacttagagaagaaagaaaaggaaacatttcat 43172322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 21486757 - 21486629
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  21486757 ttaattacaaagacaagttataccaaactaccataataaaacgttatactcaacttagcatcaaaatacaaaaattaacgcacaaaatcataagtttcat 21486658  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| |||||||||||||| |||||||    
T  21486657 aagtctctaagtttaagtcattcataaaa 21486629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 23017604 - 23017476
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  23017604 ttaattacaaaagcagattataccaaactaccataataaaacgttatgctcaacttagcatcaaaatacaaaaattaatgcacaaaatcataagtttcat 23017505  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| |||||||||||||| |||||||    
T  23017504 aagtctctaagtttaagtcattcataaaa 23017476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 226 - 397
Target Start/End: Complemental strand, 23017414 - 23017255
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||| ||||      ||||         |||||||||||||||||||| ||||    
T  23017414 aactagttaattttttcaaaaggtcaacaaacaccaccaccgcaaccctaatcggc------atca---------aaatctgaatttccaccgtcagaat 23017330  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  23017329 cgcaaccctaactggtatgtggtcccatgttcatggtttgagaactcagagaagaaagaaaaagaaacgtttcat 23017255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 226 - 400
Target Start/End: Complemental strand, 21486566 - 21486404
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||               ||||||||||||||| |||||||||    
T  21486566 aactagttaattttttcaaaaggtcaacaaacaccaccactgcaatcctaaccggcgtcg---------------aaatctgaatttccatcgtcggaat 21486482  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcatctc 400  Q
    | ||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||| ||||||||| |||||||||    
T  21486481 cacaaccctaactagtatgtgcttccctgttcatggtttgaggacttagagaagaaagaaaaagaaacgtttcatctc 21486404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 31445964 - 31445837
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||  ||||||| ||| ||||||||||| |||||||||||||||||| |     
T  31445964 ttaattacaaagacaaattataccaaagtaccataataatacattatgctcaatctagcatcaaaatacaaaaattaatgcacaaaatcataagtttta- 31445866  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| |||||||||| |||||||||||    
T  31445865 aagtctctaagtttaagccatccataaaa 31445837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 397
Target Start/End: Original strand, 5771789 - 5771958
Alignment:
Q  231 gttaattttttcaaaaggtcaacaaacaccacca---caaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgcaa 327  Q
    |||||||| |||||||||||| ||||||||||||   |||| |||||| ||||| | |||||||  |||| | || |||||||| | |||||||||| ||    
T  5771789 gttaatttcttcaaaaggtcatcaaacaccaccatcgcaactctaaccagcgtcacgatcaccggtgttgcagtcagaatttcccctgtcggaatcgtaa 5771888  T
Q  328 ccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||||||||||||||||||| |||||||||  |||||||||| ||| ||||||| ||||| ||| ||||||    
T  5771889 ccctaactggtatgtgctctcatgttcatcttttgagaactcagataagaaagaaaaaggaacttttcat 5771958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 42611109 - 42611004
Alignment:
Q  56 actaccataataaaacattatgctcaacttagcatcgaaac-acaaaaattaacgcacaaaatcata--agtttcataagtctttaagtttaagtcatcc 152  Q
    |||||||||||||||||||||||| ||||||||||| |||  ||||||||||| |||||||||||||  |||||||||||||| ||||||||||| ||||    
T  42611109 actaccataataaaacattatgcttaacttagcatcaaaattacaaaaattaatgcacaaaatcatataagtttcataagtctctaagtttaagtaatcc 42611010  T
Q  153 ataaaa 158  Q
    ||||||    
T  42611009 ataaaa 42611004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 43172696 - 43172599
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttc 127  Q
    ||||||||||||  | |||||||||||||||||||||||||| | ||| |||||||| || | ||| ||||||||||||||||| |||||||||||||    
T  43172696 ttaattacaaaggaaaattataccaaactaccataataaaacgtaatgttcaacttaacaccaaaatacaaaaattaacgcacacaatcataagtttc 43172599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 37915597 - 37915688
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaa 139  Q
    |||||||||||||||||| ||||   |||||| ||||||| ||| ||| | |||||||||| ||||||| ||||  ||||||||||||||||    
T  37915597 tataccaaactaccataaaaaaatggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcatagatttcataagtctttaa 37915688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 16710142 - 16710072
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaa 100  Q
    |||||| ||||| || |||||||||||||| ||||||||||  ||||||||||||||||||| ||| ||||    
T  16710142 ttaattgcaaaggcaaattataccaaactatcataataaaatgttatgctcaacttagcatcaaaatacaa 16710072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 17684378 - 17684308
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaa 100  Q
    |||||| ||||| || |||||||||||||| ||||||||||  ||||||||||||||||||| ||| ||||    
T  17684378 ttaattgcaaaggcaaattataccaaactatcataataaaatgttatgctcaacttagcatcaaaatacaa 17684308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 42043879 - 42043821
Alignment:
Q  73 ttatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataa 131  Q
    |||||||||| |||||||| ||| ||||||||||| |||||||||||||||||| ||||    
T  42043879 ttatgctcaagttagcatcaaaatacaaaaattaatgcacaaaatcataagttttataa 42043821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 42610941 - 42610903
Alignment:
Q  227 actagttaattttttcaaaaggtcaacaaacaccaccac 265  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42610941 actagttaattttttcaaaaggtcaacaaacaccaccac 42610903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 5771662 - 5771743
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgca 111  Q
    |||||||||||| || |||||||||||||| |||| |||||| ||||| || ||||| |||| ||| ||||||||| |||||    
T  5771662 ttaattacaaaggcaaattataccaaactatcatagtaaaacgttatgatccacttaacatcaaaatacaaaaatttacgca 5771743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 27149174 - 27149110
Alignment:
Q  326 aaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaac 390  Q
    |||||||||||||||||||| |  ||||||||||||||||||| | |||||||||  ||||||||    
T  27149174 aaccctaactggtatgtgcttcactgttcatggtttgagaactcaaagaagaaagagaaagaaac 27149110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 14742012 - 14741925
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  14742012 tataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaaacataggtttcataagtct 14741925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 4639440 - 4639501
Alignment:
Q  74 tatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  4639440 tatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 4639501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 226 - 385
Target Start/End: Complemental strand, 2607338 - 2607176
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacac---caccacaaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  2607338 aactagttaattttttcaaaaggtcaacaaacactaccaccacaaccctaaccggcgtcgcaatcaccgatgtcgaaatatgaatttccaccgtcggaat 2607239  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaa 385  Q
    |||||  ||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||    
T  2607238 cgcaatgctaactggtatgtgctctcatgttcatggtttgagaactcatagaagaaagaaaaa 2607176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 31975234 - 31975360
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  31975234 ttaattacaaaggcaaattatatcaaactaccataataaaacattatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataagtttcat 31975333  T
Q  130 aagtctttaagtttaagtcatccataa 156  Q
    |||||| ||||| ||||||||||||||    
T  31975334 aagtctctaagtctaagtcatccataa 31975360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 226 - 385
Target Start/End: Complemental strand, 16439131 - 16438970
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||||||||||||||   ||||||||||  |||||||||||||| ||| ||||||| ||||||||| ||| || |    
T  16439131 aactagttaatttcttcaaaaggtcaacaaacaccaccactgcaaccctaaccaacgtcgcaatcaccggcgtcgaaatctaaatttccactgtcaga-t 16439033  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaa 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  16439032 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaactccgagaagaaagaaaaa 16438970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 226 - 385
Target Start/End: Original strand, 33640943 - 33641104
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||| |||||||||||   |||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||    
T  33640943 aactagttaatttcttcaaaaggtcaactaacaccaccaccgcaaccctaacttgcgtcgcaatcaccgacgtcgaaatctgaatttccaccgttggaat 33641042  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaa 385  Q
     |||||| ||||||||||||||||||||||||||||||||| |||| || |||||||| ||||    
T  33641043 -gcaaccataactggtatgtgctcccatgttcatggtttgaaaactcagggaagaaagaaaaa 33641104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 24194902 - 24194747
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||| ||||| |||||||   || ||||||| | || | ||||||||||||  |||| |||||||||||||||||| |    
T  24194902 aactagttaatttcttcaaaaggtcagcaaactccaccaccgcaatcctaaccagtgttgtaatcaccgacgtcaaaatatgaatttccaccgtcggagt 24194803  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaa 378  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  24194802 cgcaaccctaactggtatatgctcccatgttcatggtttgagaacttatagaagaa 24194747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 31534587 - 31534707
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  31534587 ttaattactaaggcaaattacaccaaactaccataataaaacattatgctcaacttagcatcaaaatacaaaaattagcgcacaaaatcataagtttcat 31534686  T
Q  130 aagtctttaagtttaagtcat 150  Q
    | |||| ||||||||||||||    
T  31534687 atgtctctaagtttaagtcat 31534707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 226 - 379
Target Start/End: Original strand, 28900501 - 28900661
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccacaa---ccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||| |||||||||| |||||||   |||||||||| |||||||| | || ||||||||| |||||||||||||||| |||    
T  28900501 aactagttaatttcttcaaaaggacaacaaacactaccacaacaaccctaaccggtgtcgcaataaacggcgttgaaatatgaatttccaccgtcgaaat 28900600  T
Q  323 cgcaaccctaactgg----tatgtgctcccatgttcatggtttgagaacttagagaagaaa 379  Q
    | |||||||||||||    ||||||||||| ||||||||||||||||||| ||||||||||    
T  28900601 cacaaccctaactggtatatatgtgctcccctgttcatggtttgagaactcagagaagaaa 28900661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 31975358 - 31975484
Alignment:
Q  271 taaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaactta 370  Q
    ||||| |||||| ||||||||  ||  |||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31975358 taaccagcgtcgtaatcaccggtgtcaaaatatgaatttccaccttcggaatcgcaaccctaactggtatgtgctcccctgttcatggtttgagaactta 31975457  T
Q  371 gagaagaaagcaaaagaaacatttcat 397  Q
    |||||||||| |||| |||| ||||||    
T  31975458 gagaagaaagaaaaaaaaacgtttcat 31975484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 2607486 - 2607400
Alignment:
Q  72 attatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaagtcatccataaaa 158  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2607486 attatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataagtttcataagtctctaagtttaagtcatccataaaa 2607400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 16439312 - 16439218
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagt 124  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  16439312 ttaattacaaagataaattataccaaactaccataataaaacattatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcagaagt 16439218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 31534827 - 31534919
Alignment:
Q  297 gaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaa 389  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||| ||||||||||| ||||||||    
T  31534827 gaaatctgaatttccaccgtcgaaatcgcaaccctaactgatatgtgctctcttgttcatggtttgagaactcagagaagaaagtaaaagaaa 31534919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 24195626 - 24195541
Alignment:
Q  73 ttatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaagtcatccataaaa 158  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| || ||||||| |||| ||||||    
T  24195626 ttattctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataagtttcataaatctctaggtttaagccatcaataaaa 24195541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 28900350 - 28900414
Alignment:
Q  60 ccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagt 124  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  28900350 ccataataaaatattatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataagt 28900414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 15381129 - 15381196
Alignment:
Q  73 ttatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaag 140  Q
    |||||||||||| |||||| ||| ||||||||||| ||||||||||||||||||| ||||||| ||||    
T  15381129 ttatgctcaactcagcatcaaaatacaaaaattaatgcacaaaatcataagtttcttaagtctctaag 15381196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 32567808 - 32567892
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaa 114  Q
    |||||||||||| || | |||| ||||||| ||||||||||| ||||||| || |||||||| ||| | ||||||||| ||||||    
T  32567808 ttaattacaaaggcaaaatatatcaaactatcataataaaacgttatgctaaatttagcatcaaaataaaaaaattaatgcacaa 32567892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 2607551 - 2607490
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatc 91  Q
    ||||||| ||||| | |||||| |||||||||||||||   |||||||||||||||||||||    
T  2607551 ttaattataaagaaaaattatatcaaactaccataatattccattatgctcaacttagcatc 2607490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 31846837 - 31847011
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||||||||||||||   |||||||||  ||||||||||||| | ||||||||||| |||||||| |||||||||    
T  31846837 aactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaacaagcgtcgcaatcactggcgttgaaatctaaatttccatcgtcggaat 31846936  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    |||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||| ||||||||| ||||||    
T  31846937 cgcaaccctaactggtatgtgctcccctgtttatggtttgagaactcagagaaaaaagaaaaagaaacgtttcat 31847011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 38295393 - 38295568
Alignment:
Q  226 aactagttaattttttcaaaa-ggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaa 321  Q
    ||||||||||||| ||||||| ||||| |||||||||||||   |||||||||||||||| ||||||||||| | ||||| ||||||||||| |||||||    
T  38295393 aactagttaatttcttcaaaaaggtcagcaaacaccaccaccgcaaccctaaccggcgtcacaatcaccgacatcgaaatatgaatttccacagtcggaa 38295492  T
Q  322 tcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||| ||||||    
T  38295493 tcgcaaccctaactggtatgtgctcccctgtttatggtttgagaactcagagaagaaagaaaaagaaacgtttcat 38295568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 38295215 - 38295343
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  38295215 ttaattacaaagacaaattataccaaactaccataataaaacattatgctcaacttaacatcgtaatacaaaaattaacgcacaaaatcataagtttcat 38295314  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    ||||||||||||||||| |||||| ||||    
T  38295315 aagtctttaagtttaagccatccaaaaaa 38295343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 226 - 401
Target Start/End: Complemental strand, 40830063 - 40829886
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||||||||| |||||   ||||||||||| ||||||||||| |  ||| |||||||||||||||||||||  |||    
T  40830063 aactagttaatttcttcaaaaggtcaacaaacactaccactgcaaccctaaccg-cgtcgcaatcatcagcgtggaaatctgaatttccaccgtcaaaat 40829965  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcatctca 401  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  40829964 cgcaaccctaactggtacatgctcccctgttcatggtttgagaacttagagaagaaagaaaaagaaacgtttcatctca 40829886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 226 - 397
Target Start/End: Complemental strand, 34342674 - 34342500
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| || |||||||||||||||||||||||   ||||||||||| ||||||||| |||  ||| ||||| |||||||||||||| |||||    
T  34342674 aactagttaatttcttgaaaaggtcaacaaacaccaccaccacaaccctaaccgacgtcgcaattaccagcgtcgaaatatgaatttccaccgttggaat 34342575  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    |||||||||||||||||||||||||| | |||||||||||||||||  |||||||||| ||||||||| ||||||    
T  34342574 cgcaaccctaactggtatgtgctcccttattcatggtttgagaactcggagaagaaagaaaaagaaacgtttcat 34342500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 9731564 - 9731436
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||  || |||||||||||||||||||||||||  ||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||| |    
T  9731564 ttaattacaaaagcaaattataccaaactaccataataaaatgttatgctcaacttggcatcaaaatacaaaaattaatgcacaaaatcataagtttcgt 9731465  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||||||||||||||||||||||||||    
T  9731464 aagtctttaagtttaagtcatccataaaa 9731436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 40830252 - 40830125
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||  ||||||||| ||||||||||||||||||||||    
T  40830252 ttaattacaaag-caaattataccaaactatcataataaaacattatgctcaacttagcatcaaaattcaaaaattagcgcacaaaatcataagtttcat 40830154  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    || ||| ||||||||||||||||||||||    
T  40830153 aaatctctaagtttaagtcatccataaaa 40830125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 2308034 - 2308166
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||  | |||||||||||||||||||||||||| |||||||  |||||||||| ||  |||||||||||| ||||||||||||||||||||    
T  2308034 ttaattacaaaggtaaattataccaaactaccataataaaacgttatgctacacttagcatcaaattacaaaaattaactcacaaaatcataagtttcat 2308133  T
Q  130 aagtctttaagtttaagtcatccataaaaacat 162  Q
    |||||| |||||||||| |||||||||||||||    
T  2308134 aagtctctaagtttaagccatccataaaaacat 2308166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 42242419 - 42242291
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||| ||| ||| ||||||| |||||||||||||||||| |||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||    
T  42242419 ttaattagaaatacaaattatactaaactaccataataaaaccttatgctcaacttatcatcaaaatacaaaaaataacgcacaaaatcataagtttcat 42242320  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| |||||||| |||||||||||||    
T  42242319 aagtctctaagtttaggtcatccataaaa 42242291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 34342865 - 34342736
Alignment:
Q  30 ttaattacaaagacagattataccaaactacc-ataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttca 128  Q
    ||||||||||||||| |||||| ||||||||| ||||||||| |||||| ||||||||||||| ||| |||||||||||| ||||||||||||| |||||    
T  34342865 ttaattacaaagacaaattataacaaactacccataataaaatattatgttcaacttagcatcaaaatacaaaaattaacacacaaaatcataaatttca 34342766  T
Q  129 taagtctttaagtttaagtcatccataaaa 158  Q
    ||||||| |||||||||| |||| ||||||    
T  34342765 taagtctctaagtttaagccatctataaaa 34342736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 31846665 - 31846775
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaagt 147  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||  ||| |||||||| |||||||||||||||||||||||||||||| || ||||||||    
T  31846665 tataccaaactaccataatgaaacgttatgctcaacttagtattaaaatacaaaaatgaacgcacaaaatcataagtttcataagtctctacgtttaagt 31846764  T
Q  148 catccataaaa 158  Q
    |||||||||||    
T  31846765 catccataaaa 31846775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 18727098 - 18727192
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagt 124  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||| |||||||| |||||||||||||||||||    
T  18727098 ttaattacaaaggcagattatatcaaactaccataataaaacgttatgttcaacttagcatcaaaatacaaaaatgaacgcacaaaatcataagt 18727192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 30850977 - 30850867
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||||| | ||||  |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |    
T  30850977 ttaattacaaagacaaaatatatgaaactaccataataaaacgttatgctcaacttagcatcaaaatacaaaaattaacacacaaaatcataagtttcgt 30850878  T
Q  130 aagtctttaag 140  Q
    || ||| ||||    
T  30850877 aaatctctaag 30850867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 9731375 - 9731271
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||| ||||||| ||||||||||||||||||||||||||   |||||||| |||||||||||||| ||||||  ||||||||||||||| |||||||||    
T  9731375 aactaattaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaatcggcgtcgcaatcatcgacgtcaaaatctgaatttccatcgtcggaat 9731276  T
Q  323 cgcaa 327  Q
    |||||    
T  9731275 cgcaa 9731271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 395
Target Start/End: Original strand, 18727312 - 18727484
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||  |||||||||||||   ||||| |||| ||||| |||||| ||  || | ||||  ||||| | || |||||||    
T  18727312 aactagttaatttcttcaaaaggtcgtcaaacaccaccaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcgaaatttaccccatcggaat 18727411  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttc 395  Q
    ||||||||||| |||||||||||| | |||||||||||| |||||| ||| ||| ||| |||| |||| ||||    
T  18727412 cgcaaccctaattggtatgtgctctcttgttcatggtttaagaactcagataaggaagtaaaaaaaacgtttc 18727484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 2103886 - 2103795
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataa 122  Q
    ||||||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||| ||| || ||||||||| | |||||||||||    
T  2103886 ttaattataaagacaaagtatatcaaaccaccataataaaacattatgttcaacttagcatcaaaatac-aaaattaactcgcaaaatcataa 2103795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 18899443 - 18899530
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| |||||||||||| |||||||||||||    
T  18899443 tataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaatcataggtttcataagtct 18899530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 37654895 - 37654949
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaa 102  Q
    |||||||||| ||||| |||||| ||||||||||||||| |||| ||| ||||||    
T  37654895 tataccaaaccaccattataaaatattatgctcaacttaacatcaaaatacaaaa 37654949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 35404098 - 35404150
Alignment:
Q  345 tcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||||||||||||||||||||||||  ||||  |||| ||||||||| ||||||    
T  35404098 tcccatgttcatggtttgagaactcggagacaaaagaaaaagaaacgtttcat 35404150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 226 - 386
Target Start/End: Complemental strand, 32890306 - 32890144
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  32890306 aactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaaccggcgtcgcaatcaccgacgtcgaaatatgaatttccaccgttggaat 32890207  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaag 386  Q
     |||||| ||||||||||||||||||||||||||||||||| |||| || |||||||| |||||    
T  32890206 -gcaaccataactggtatgtgctcccatgttcatggtttgaaaactcagggaagaaagaaaaag 32890144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 24966162 - 24966336
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||||||||||||||   ||||||||||||| | |||||| ||| ||| ||||||| | |||||||||||| |||    
T  24966162 aactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaaccggcattgcaatctccggcgtcgaaatctaagtttccaccgtcgaaat 24966261  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  24966262 cgcaaccctaattggtatgtactcccatgttcgtggtttgagaactcagagaagaaagaaaaagaaacatttcat 24966336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 32890497 - 32890370
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  32890497 ttaattacaaggacaaattataccaaactaccataataaaacattatgctcaacttagcatcaaaatacaaaaattaacgcccaaaatcataagtttcat 32890398  T
Q  130 aagtctttaagtttaagtcatccataaa 157  Q
    |||||| |||||||||||||||||||||    
T  32890397 aagtctctaagtttaagtcatccataaa 32890370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 226 - 397
Target Start/End: Complemental strand, 46287141 - 46286967
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||||||| ||||||   ||||||||||| |||||||||||| |  || ||||| |||||||||| ||| |||||    
T  46287141 aactagttaatttcttcaaaaggtcaacaaacatcaccaccgcaaccctaaccgacgtcgcaatcacgggagtcgaaatttgaatttccatcgttggaat 46287042  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    |||||||||||||||||||||||||| | |||||||||||||||||  |||||||||| ||||||||| ||||||    
T  46287041 cgcaaccctaactggtatgtgctcccttattcatggtttgagaactcggagaagaaagaaaaagaaacgtttcat 46286967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 29509542 - 29509669
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||    
T  29509542 ttaattacaagggcaaattataccaaactaccataataaaacattatgctcaacttagcatcaaaatacaaaaattaacgcccaaaatcataagtttcat 29509641  T
Q  130 aagtctttaagtttaagtcatccataaa 157  Q
     ||||| |||||||||||||||||||||    
T  29509642 gagtctctaagtttaagtcatccataaa 29509669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 226 - 390
Target Start/End: Complemental strand, 33139225 - 33139058
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||| ||||||| ||  || ||||||||||||||||||||||||||    
T  33139225 aactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaaccggcgttgcaatcatcggagtcgaaatctgaatttccaccgtcggaat 33139126  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaac 390  Q
    | ||||||||| |||||| ||||||||||||| | ||||||||||| | | ||||||| |||||||||    
T  33139125 cacaaccctaattggtatctgctcccatgttcttagtttgagaactcatataagaaagaaaaagaaac 33139058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 46862425 - 46862553
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||| ||||||||||||||||||||    
T  46862425 ttaattacaaaggcaaattatatcaaactaccataataaaacattatactcaacttagcatcaaaatacaaagattaacacacaaaatcataagtttcat 46862524  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| ||||||||||||||||||||||    
T  46862525 aagtctctaagtttaagtcatccataaaa 46862553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 24965971 - 24966100
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||    
T  24965971 ttaattacaacgacaaattataccaaactaccataataaaacgttatgctcaacttaacatcaaaataccaaaattaacgcacaaaatcataagtttcat 24966070  T
Q  130 aagtct-ttaagtttaagtcatccataaaa 158  Q
    |||||| |||||||||| ||||||||||||    
T  24966071 aagtctcttaagtttaaatcatccataaaa 24966100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 386
Target Start/End: Original strand, 29509736 - 29509894
Alignment:
Q  230 agttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgca 326  Q
    ||||||||| ||||||||||||||||||||||||||   ||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||| |||    
T  29509736 agttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaactggcgtcgcaatcaccggcgttgaactctgaatttccaccgttggaat-gca 29509834  T
Q  327 accctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaag 386  Q
    ||| ||||||||| ||||||||||||||||||||||| |||| |  |||||||| |||||    
T  29509835 accataactggtacgtgctcccatgttcatggtttgaaaactcaaggaagaaagaaaaag 29509894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 12754927 - 12754801
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||| ||||| || |||||||||||||||||||||||||| ||| ||||||| || |||| ||| |||||||||||||||||||||||||||||||||    
T  12754927 ttaatttcaaaggcaaattataccaaactaccataataaaacgttacgctcaacctaacatcaaaatacaaaaattaacgcacaaaatcataagtttcat 12754828  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||  |||||||||  |||||||||||    
T  12754827 aagtc--taagtttaatccatccataaaa 12754801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 33139393 - 33139288
Alignment:
Q  53 caaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaagtcatcc 152  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||  ||| |    
T  33139393 caaactaccataataaaacgttatgctcaacgtagcatcaaaatacaaaaattaacgcacaaaatcataagtttcataagtctctaagtttaatccatgc 33139294  T
Q  153 ataaaa 158  Q
    ||||||    
T  33139293 ataaaa 33139288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 251 - 397
Target Start/End: Original strand, 53574002 - 53574150
Alignment:
Q  251 aacaaacaccaccacaac--cctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctccc 348  Q
    |||||||||||||||  |  |||||||||||| ||||||| | | || |||||| ||||||||||||||||||||  ||||||||||||||| |||| ||    
T  53574002 aacaaacaccaccaccgcaacctaaccggcgtagcaatcaacaatgtcgaaatcggaatttccaccgtcggaatcagaaccctaactggtatatgctacc 53574101  T
Q  349 atgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
     ||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  53574102 ctgttcatggtttgagaactcagagaagaaagaaaaagaaacgtttcat 53574150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 379
Target Start/End: Original strand, 46862666 - 46862757
Alignment:
Q  288 accgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaa 379  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||    
T  46862666 accgacgtcgaaatctgaatttctaccgtcggaatcgcaaccctaactagtatgtgctcccctgttcatggtttgagaactcagaaaagaaa 46862757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 26955871 - 26955760
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||  ||| |    
T  26955871 ttaattacaaagataaaatatatcaaactaccataataaaacattatgctcaacttagcatcaaaatataaaaactaacgcacaaaatcataatcttctt 26955772  T
Q  130 aagtctttaagt 141  Q
    |||||| |||||    
T  26955771 aagtctctaagt 26955760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 14334929 - 14334828
Alignment:
Q  34 ttacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagt 133  Q
    |||||||| || |||||| ||||||||||| ||||||| |||||||||||| |||||| ||| ||||||||||| ||| |||||||||||||||||||||    
T  14334929 ttacaaaggcaaattatatcaaactaccattataaaacgttatgctcaactaagcatcaaaatacaaaaattaatgcaaaaaatcataagtttcataagt 14334830  T
Q  134 ct 135  Q
    ||    
T  14334829 ct 14334828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 35517998 - 35518119
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| ||  ||| |||| | ||||||||||||| |||||| ||||||||||||| ||| |||||||||| | || |||||||||||||||||    
T  35517998 ttaattacaaaggcaagttaaaccagattaccataataaaatattatgttcaacttagcatcaaaatacaaaaattagcacataaaatcataagtttcat 35518097  T
Q  130 aagtctttaagtttaagtcatc 151  Q
    |||||| ||| |||||||||||    
T  35518098 aagtctctaaatttaagtcatc 35518119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 26490785 - 26490884
Alignment:
Q  56 actaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaagtcatccata 155  Q
    |||||||||||||||  ||||   ||||||| |||| ||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  26490785 actaccataataaaatgttat---caacttaacatcaaaatacaaaaattaatgtacaaaatcataagtttcataagtctctaagtttaagtcatccata 26490881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 50517690 - 50517617
Alignment:
Q  54 aaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttc 127  Q
    ||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||    
T  50517690 aaactaccataataaaatattatgctcaacttaacatcaaaatacaaaaattaacacacaaaatcataagtttc 50517617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 35518229 - 35518283
Alignment:
Q  288 accgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgt 342  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  35518229 accgacgttgaaatctgaatttccacggtcgaaatcgcaaccctaactggtatgt 35518283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 17503527 - 17503569
Alignment:
Q  326 aaccctaactggtatgtgctcccatgttcatggtttgagaact 368  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  17503527 aaccctaattggtatgtgctcccatgttcatggtttgagaact 17503569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 41206942 - 41207003
Alignment:
Q  73 ttatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtc 134  Q
    ||||| |||||||| |||| ||||| ||||||||||||| ||||| ||||||||||||||||    
T  41206942 ttatgttcaacttaacatcaaaacataaaaattaacgcataaaataataagtttcataagtc 41207003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 50517545 - 50517490
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccacca---caaccctaaccggc 278  Q
    ||||||||||||| |||||||||||||||||||||||||   ||||||||||||||    
T  50517545 aactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaaccggc 50517490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 22480248 - 22480157
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataa 122  Q
    ||||||| ||||||| | ||||   ||||||| |||||||||||||||||||||||| |||| ||| || ||||||||| | |||||||||||    
T  22480248 ttaattataaagacaaagtatatacaactaccgtaataaaacattatgctcaacttatcatcaaaatac-aaaattaacacgcaaaatcataa 22480157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 29469724 - 29469637
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  29469724 tataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 29469637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 35518179 - 35518218
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac 265  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  35518179 aactagttaatttcttcaaaaggtcaacaaataccaccac 35518218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 8084726 - 8084665
Alignment:
Q  74 tatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  8084726 tatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 8084665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 55165858 - 55165791
Alignment:
Q  329 cctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||||||||||||||||||   | |||||||||||| |||| | ||||||||| ||||||||| ||||||    
T  55165858 cctaactggtatgtgctcatcttttcatggtttgataactcaaagaagaaag-aaaagaaacgtttcat 55165791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 226 - 389
Target Start/End: Original strand, 32759771 - 32759937
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||| ||||||||||||||||| |   |||||||||||  ||||||||||||| ||| ||||||||||||| ||||||||||||    
T  32759771 aactagttaatttcttcaaatggtcaacaaacaccacccccgcaaccctaaccgatgtcgcaatcaccggcgtcgaaatctgaattttcaccgtcggaat 32759870  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaa 389  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  32759871 cgcaaccctaactgatatgtgctcccttgttcatggtttgagaactcagagaagaaagaaaaagaaa 32759937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 47371239 - 47371413
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccacc---acaaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||| |||||||||   ||||||||||||||| | |||||||||| ||| ||||||| | |||||||||||| |||    
T  47371239 aactagttaatttcttcaaaaggtcaacgaacaccaccgccacaaccctaaccggcattgcaatcaccggcgtcgaaatctaagtttccaccgtcgaaat 47371338  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
     |||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  47371339 tgcaaccctaattggtatgtgctcccatgttcgtggtttgagaactcagagaagaaagaaaaagaaacatttcat 47371413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 226 - 388
Target Start/End: Original strand, 49236667 - 49236832
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccaca---accctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| || |||||||||||||| |||||||||   ||| ||||| |||| ||||||| |||||| ||||||||||||| |||||||| |||    
T  49236667 aactagttaatttctttaaaaggtcaacaaataccaccacagcaaccataaccagcgttgcaatcatcgacgtcgaaatctgaattttcaccgtcgaaat 49236766  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaa 388  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49236767 cgcaaccctaattggtatgtgctcccatgttcatggtttgagaacttagagaagaaagaaaaagaa 49236832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 47371065 - 47371177
Alignment:
Q  46 attataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaa 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||    
T  47371065 attataccaaactaccataataaaacattatgctcaacttagcatcaaaacataaaaattaacgcacaaaattataagtttcataagtctataagtttaa 47371164  T
Q  146 gtcatccataaaa 158  Q
    |||||||||||||    
T  47371165 gtcatccataaaa 47371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 49452540 - 49452668
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||| | |||||| ||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||    
T  49452540 ttaattacaaagataaattatatcaaactaccgtaataaaatattatgctcaacttagcatcaaaatacaaaaattaacgcaccaaatcataagtttcat 49452639  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| ||||||||||||||||||||||    
T  49452640 aagtctctaagtttaagtcatccataaaa 49452668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 229 - 379
Target Start/End: Original strand, 42304054 - 42304207
Alignment:
Q  229 tagttaattttttcaaaaggtcaacaaacaccaccacaa---ccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgc 325  Q
    |||||||||| ||||||| ||||||||||||||||||||   |||||||| | ||| ||||||||| ||||||||| ||||||||||||||| ||||| |    
T  42304054 tagttaatttcttcaaaacgtcaacaaacaccaccacaacaaccctaaccagtgtcacaatcaccggcgttgaaatatgaatttccaccgtctgaatcac 42304153  T
Q  326 aaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaa 379  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  42304154 aaccctaaatggtatgtgctcccctgttcatggtttgagaacttagaaaagaaa 42304207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 226 - 397
Target Start/End: Complemental strand, 3593667 - 3593493
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    |||| |||||||| |||||||||| ||||||||||| |||   |||||||||||| ||||||||||  | ||| ||||||||||||||||| ||| ||||    
T  3593667 aacttgttaatttcttcaaaaggtaaacaaacaccaacaccgcaaccctaaccggtgtcgcaatcattggcgtcgaaatctgaatttccactgtcagaat 3593568  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    | |||| ||||||| ||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  3593567 cacaacactaactgatatgtgctcccctattcatggattgagaacttagagaagaaagaaaaagaaacatttcat 3593493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 229 - 358
Target Start/End: Original strand, 35176941 - 35177073
Alignment:
Q  229 tagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgc 325  Q
    |||| ||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35176941 tagtgaatttcttcaaaaggtcaacaaacaccaccaacgtaaccctaaccggcgtcgcaatcaccgacgtcgaaatctgaatttccaccgtcggaatcgc 35177040  T
Q  326 aaccctaactggtatgtgctcccatgttcatgg 358  Q
    |||||| ||||||||| |||||  |||||||||    
T  35177041 aaccctcactggtatgcgctcctctgttcatgg 35177073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 32759560 - 32759666
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  32759560 ttaattacaaaggcaaattataccaaactaccataataaaacgttatgctaaacttagcatcaaaatacaaaaattaacgcacaaaatcatatgtttcat 32759659  T
Q  130 aagtctt 136  Q
    |||||||    
T  32759660 aagtctt 32759666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 49236477 - 49236605
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||| ||||||| | ||||||| |||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||  ||||||||||||||||||    
T  49236477 ttaataacaaagaaaaattatactaaactaccataataaaacgttatgctctacttagcatcaaaatacaaaaattaacgtccaaaatcataagtttcat 49236576  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||  |||||||||| |||||||||||    
T  49236577 aagtccctaagtttaagccatccataaaa 49236605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 226 - 390
Target Start/End: Complemental strand, 25253958 - 25253791
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||||||||||||||   |||||||   | |||||||||||||| ||| ||||| |||||||||||||| ||| |    
T  25253958 aactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctatttgacgtcgcaatcaccggcgtcgaaatatgaatttccaccgttggatt 25253859  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaac 390  Q
    |||||||||||| ||||||| ||||| | |||| ||||||||||||   | ||||||| |||||||||    
T  25253858 cgcaaccctaaccggtatgtactcccttattcaaggtttgagaactcgaaaaagaaagaaaaagaaac 25253791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 48966234 - 48966327
Alignment:
Q  297 gaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaac 390  Q
    ||||| |||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48966234 gaaatttgaatttccaccgtcggaattgcaaccataactagtatgtgctcccatgttcatggtttgagaacttagagaagaaagaaaaagaaac 48966327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 28403495 - 28403586
Alignment:
Q  67 aaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaagtcatccataaaa 158  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  28403495 aaaactttatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataattttcataagtctctaagtttaagtcatccataaaa 28403586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 48965996 - 48966116
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||||||| ||| |||||||       | |||||||||||||||||    
T  48965996 ttaattacaaaggcaaattatactaaactaccataataaaacattatgttcaacttagcatcaaaatacaaaaa-------ataaaatcataagtttcat 48966088  T
Q  130 aagtctttaagtttaagtcatccataaa 157  Q
    ||||||||||||||||| ||||||||||    
T  48966089 aagtctttaagtttaagccatccataaa 48966116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 3593857 - 3593729
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||| |||||||| || | ||| ||||||||||  ||||| ||||||||||||| |    
T  3593857 ttaattacaaaggcaaattataccaaactaccataataaaacataatgttcaacttaacaccaaaatacaaaaattagtgcacacaatcataagtttctt 3593758  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| |||||||||||| | |||||||    
T  3593757 aagtctctaagtttaagtcgttcataaaa 3593729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 385
Target Start/End: Original strand, 49452729 - 49452884
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||| | |||||||||| |||||   ||||||||||||||||||||| | || ||| ||||| ||| |||||||||| |||||    
T  49452729 aactagttaatttcttcaaaacgacaacaaacactaccaccgcaaccctaaccggcgtcgcaataaacggcgtcgaaatatgactttccaccgttggaat 49452828  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaa 385  Q
    |||||||||||||||||| ||||||| |||||       ||||||||||||||||||| ||||    
T  49452829 cgcaaccctaactggtatatgctcccctgttc-------gagaacttagagaagaaagaaaaa 49452884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 25254118 - 25254023
Alignment:
Q  63 taataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaagtcatccataaaa 158  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  25254118 taataaaatgttatgctcaacttagcatcaaaaaacaaaaattagcgcacaaaatcataagtttcataagtctctaagttcaagtcattcataaaa 25254023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 35176755 - 35176858
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| || |||||| ||||||||||||||||||  ||||||||||||||||||| ||| ||||||||| |||||||||||||||||| || |    
T  35176755 ttaattacaaaggcaaattatagcaaactaccataataaaatgttatgctcaacttagcatcaaaatacaaaaattcacgcacaaaatcataagtctctt 35176854  T
Q  130 aagt 133  Q
    ||||    
T  35176855 aagt 35176858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 2292753 - 2292863
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||  || | |||||||||||||||||||||||| ||||| |||||||||| || ||| ||||||||||||||||||||||| ||||||| |    
T  2292753 ttaattacaaatgcaaactataccaaactaccataataaaacgttatgttcaacttagcgtcaaaatacaaaaattaacgcacaaaatcacaagtttctt 2292852  T
Q  130 aagtctttaag 140  Q
     ||||| ||||    
T  2292853 gagtctctaag 2292863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 8122565 - 8122461
Alignment:
Q  34 ttacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagt 133  Q
    |||||||| || ||||||||||||||| || ||||||| ||||||||||||||||||| ||| |||||||||||| |   ||||||||||||||| ||||    
T  8122565 ttacaaaggcaaattataccaaactactattataaaacgttatgctcaacttagcatcaaaatacaaaaattaacac---aaatcataagtttcacaagt 8122469  T
Q  134 ctttaagt 141  Q
    || |||||    
T  8122468 ctctaagt 8122461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 288 - 397
Target Start/End: Original strand, 28403700 - 28403809
Alignment:
Q  288 accgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaaga 387  Q
    |||| ||||||||||||||||| ||  |||||||||  ||||||||||  ||||||||||| ||||||||||||||||||| || |||||||  ||||||    
T  28403700 accggcgttgaaatctgaattttcatagtcggaatcataaccctaacttttatgtgctcccctgttcatggtttgagaactcagtgaagaaataaaaaga 28403799  T
Q  388 aacatttcat 397  Q
    ||| ||||||    
T  28403800 aacgtttcat 28403809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 15927676 - 15927574
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||||| ||||||||||||||| |||||||||   ||| ||||| |||||||| ||| | ||||||||||||| |||||||||| ||||||    
T  15927676 ttaattacaaagacaaattataccaaactactataataaaa-tgtattctcaatttagcatcaaaatataaaaattaacgcaaaaaatcataaatttcat 15927578  T
Q  130 aagt 133  Q
    ||||    
T  15927577 aagt 15927574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 19863511 - 19863426
Alignment:
Q  31 taattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaa 116  Q
    |||||||||||||| ||||||  |||||||||||||||||  |||||||||||||| |||| ||| ||||||||||| ||||||||    
T  19863511 taattacaaagacaaattatattaaactaccataataaaatgttatgctcaacttaacatcaaaatacaaaaattaatgcacaaaa 19863426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 42303897 - 42303963
Alignment:
Q  58 taccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagt 124  Q
    |||||||||||||  |||||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  42303897 taccataataaaatgttatgctcaacttagcttcaaaatacaaaaattaacgcacaaaatcataagt 42303963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 19863427 - 19863350
Alignment:
Q  81 aacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaagtcatccataaaa 158  Q
    |||||| |||| ||| ||||||||||| |||| |||||||||||||||||| ||  ||||||||||||||||||||||    
T  19863427 aacttaacatcaaaatacaaaaattaatgcacgaaatcataagtttcataaatccctaagtttaagtcatccataaaa 19863350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 28403430 - 28403481
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctca 81  Q
    ||||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  28403430 ttaattacaaagaaaaattataccaaactaccataataaaactttatgctca 28403481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 48966175 - 48966214
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac 265  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  48966175 aactagttaatttcttcaaaaggtcaacaaacaccaccac 48966214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 5208813 - 5208899
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtc 134  Q
    |||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||||||||||||||||    
T  5208813 tataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataagtttcataagtc 5208899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 28403650 - 28403686
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccac 262  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28403650 aactagttaatttcttcaaaaggtcaacaaacaccac 28403686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 41353999 - 41353915
Alignment:
Q  51 accaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    ||||||||||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  41353999 accaaactaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 41353915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 1242821 - 1242908
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  1242821 tataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 1242908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 11578640 - 11578727
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  11578640 tataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 11578727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 226488 - 226416
Alignment:
Q  59 accataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataag 132  Q
    |||||||||||   ||||| ||||||||||||| ||| |||||| |||||   |||||||||||||||||||||    
T  226488 accataataaagagttatgttcaacttagcatcaaaatacaaaa-ttaacttgcaaaatcataagtttcataag 226416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 8147897 - 8147836
Alignment:
Q  74 tatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  8147897 tatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 8147836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 26758171 - 26758110
Alignment:
Q  74 tatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  26758171 tatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 26758110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 21447281 - 21447210
Alignment:
Q  59 accataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataa 131  Q
    ||||||||||| |  |||||||||||||||||| ||| | || ||||||| | || |||||||||||||||||    
T  21447281 accataataaagcgatatgctcaacttagcatcaaaata-aacaattaactcgcataatcataagtttcataa 21447210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 226 - 401
Target Start/End: Original strand, 12522075 - 12522253
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||||||||||||| |   ||||| || || |  |||||||| || ||| | ||||||||||||||||| ||||||    
T  12522075 aactagttaatttcttcaaaaggtcaacaaacaccaccgccgcaacccaaatcgacaacgcaatcatcggcgtcgcaatctgaatttccaccgccggaat 12522174  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcatctca 401  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  12522175 cgcaaccctaactggtatgtgctcccctgttcatcgtttgagaacttagagaagaaagaaaaggaaacatttcatctca 12522253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 226 - 386
Target Start/End: Complemental strand, 42423635 - 42423473
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||| |||||||||||   ||||||||| |||||||||||||||| ||| |||||||||||||||||||| |||||    
T  42423635 aactagttaatttcttcaaaaggtcaactaacaccaccaccgcaaccctaactggcgtcgcaatcaccggcgtcgaaatctgaatttccaccgttggaat 42423536  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaag 386  Q
     |||||| |||||||||||||||| |||||||||||||||| |||| || |||||||| |||||    
T  42423535 -gcaaccataactggtatgtgctctcatgttcatggtttgaaaactcagggaagaaagaaaaag 42423473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 8029334 - 8029461
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  8029334 ttaattacaaaaacaaattattc-aaactaccataataaaacattatgctcaacttagcatcaaaatacaaagattaacgcacaaaatcataagtttcat 8029432  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| ||||||||||||||||||||||    
T  8029433 aagtctctaagtttaagtcatccataaaa 8029461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 12521901 - 12522012
Alignment:
Q  46 attataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaa 145  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  12521901 attataccaaactaccataataaaatattatgctcaacttagcatcaaaatacaaaaactaacgcaccaaatcataagtttcataagtctttaagtttaa 12522000  T
Q  146 gtcatccataaa 157  Q
    ||||||||||||    
T  12522001 gtcatccataaa 12522012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 42423810 - 42423699
Alignment:
Q  46 attataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaa 145  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  42423810 attataccaaactaccataataaaacattatgttcaacttaacatcaaaatacaaaaattaacgcccaaaatcataagtttcataagtctctaagtttaa 42423711  T
Q  146 gtcatccataaa 157  Q
    ||||||||||||    
T  42423710 gtcatccataaa 42423699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 27974462 - 27974575
Alignment:
Q  46 attataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataa-gtctttaagttta 144  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  27974462 attacaccaaactaccataataaaacgttatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataagtttcataatgtctctaagttta 27974561  T
Q  145 agtcatccataaaa 158  Q
    ||||||||||||||    
T  27974562 agtcatccataaaa 27974575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 28031731 - 28031844
Alignment:
Q  46 attataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataa-gtctttaagttta 144  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  28031731 attacaccaaactaccataataaaacgttatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataagtttcataatgtctctaagttta 28031830  T
Q  145 agtcatccataaaa 158  Q
    ||||||||||||||    
T  28031831 agtcatccataaaa 28031844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 226 - 385
Target Start/End: Original strand, 27878281 - 27878443
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccacca---caaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||||||||||||||   |||||||||||| | |  ||||||||| ||| ||||||| |||||||||  |||||||    
T  27878281 aactagttaatttcttcaaaaggtcaacaaacaccaccatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaatttccactttcggaat 27878380  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaa 385  Q
      ||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  27878381 gacaaccctgattggtatgtgctcccatgttcatggtttcagaactcagagaagaaagaaaaa 27878443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 226 - 385
Target Start/End: Original strand, 28018462 - 28018624
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccacca---caaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||||||||||||||   |||||||||||| | |  ||||||||| ||| ||||||| |||||||||  |||||||    
T  28018462 aactagttaatttcttcaaaaggtcaacaaacaccaccatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaatttccactttcggaat 28018561  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaa 385  Q
      ||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  28018562 gacaaccctgattggtatgtgctcccatgttcatggtttcagaactcagagaagaaagaaaaa 28018624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 3007300 - 3007406
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||||    
T  3007300 ttaattacaaagacaaattataccaaactatcataataaaacgttatgctcaacttagcatcaaaatacaaaaattaatgcacaaaattataagtttcat 3007399  T
Q  130 aagtctt 136  Q
    |||||||    
T  3007400 aagtctt 3007406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 27869417 - 27869545
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||| |||| ||||||||||| ||||| |||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  27869417 ttaattacaacgacaaattataccaaattaccacaataaaacgttatgctcaacttagcatc-aaaaactaaaattaacgcacaaaatcataagtttcat 27869515  T
Q  130 -aagtctttaagtttaagtcatccataaaa 158  Q
     |||||| ||||||||||||||| ||||||    
T  27869516 aaagtctctaagtttaagtcatctataaaa 27869545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 12737564 - 12737691
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| || |||||||||| ||||| ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  12737564 ttaattacaaaggcatattataccaa-ctaccctaataaaacgttatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataaatttcat 12737662  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| |||||||||  | |||||||||    
T  12737663 aagtctctaagtttaaaccttccataaaa 12737691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 44977351 - 44977223
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||| | ||||||||||||||| |||||||||  ||||| |||| |||||||| |||   |||||||||||||||||||||||||||||||    
T  44977351 ttaattacaaagataaattataccaaactactataataaaatgttatgttcaatttagcatcaaaatttaaaaattaacgcacaaaatcataagtttcat 44977252  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| |||||| |||||||||||||||    
T  44977251 aagtctctaagttcaagtcatccataaaa 44977223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 226 - 380
Target Start/End: Original strand, 27915225 - 27915382
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccacca---caaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||||||||||||||   |||||||||||| | |  ||||||||| ||| ||||||| ||||| | |  |||||||    
T  27915225 aactagttaatttcttcaaaaggtcaacaaacaccaccatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaattttcgctttcggaat 27915324  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaag 380  Q
    | ||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||    
T  27915325 cacaaccctgattggtatgtgctcccatgttcatggtttcagaactcagagaagaaag 27915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 226 - 380
Target Start/End: Original strand, 27961644 - 27961801
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccacca---caaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||||||||||||||   |||||||||||| | |  ||||||||| ||| ||||||| ||||| | |  |||||||    
T  27961644 aactagttaatttcttcaaaaggtcaacaaacaccaccatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaattttcgctttcggaat 27961743  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaag 380  Q
    | ||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||    
T  27961744 cacaaccctgattggtatgtgctcccatgttcatggtttcagaactcagagaagaaag 27961801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 6387381 - 6387509
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||  | ||||||  ||||| | ||||| |||| ||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||    
T  6387381 ttaattacaaaggaaaattatatgaaacttctataatgaaacgttatgctcaacttagcatcaaaatacaaaaattaacgcacataattataagtttcat 6387480  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| ||||||||||||||||||||||    
T  6387481 aagtctctaagtttaagtcatccataaaa 6387509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 297 - 401
Target Start/End: Complemental strand, 41394296 - 41394193
Alignment:
Q  297 gaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttca 396  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||    
T  41394296 gaaatctgaatttc-attgtcggaatcgcaaccctaactggtatgtgctcccctgttcatgatttgagaacttagagaagaaagaaaaagaaacctttca 41394198  T
Q  397 tctca 401  Q
    |||||    
T  41394197 tctca 41394193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 226 - 345
Target Start/End: Original strand, 12737753 - 12737875
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||||||||||||||   ||||||||||  ||||||||||| || | | ||||||||||||| ||||||||||||    
T  12737753 aactagttaatttcttcaaaaggtcaacaaacaccaccactgcaaccctaaccaacgtcgcaatcatcggcatcgaaatctgaattttcaccgtcggaat 12737852  T
Q  323 cgcaaccctaactggtatgtgct 345  Q
    ||||||||||||| ||| |||||    
T  12737853 cgcaaccctaactagtacgtgct 12737875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 379
Target Start/End: Original strand, 6387775 - 6387924
Alignment:
Q  233 taattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgcaacc 329  Q
    |||||| ||||||| |||| |||||||||||||   ||||||||||  | |||||||||||| ||||| |||| |||||||| || ||| ||||||||||    
T  6387775 taatttcttcaaaaagtcatcaaacaccaccaccgcaaccctaaccaacatcgcaatcaccggcgttgcaatcggaatttcccccatcgaaatcgcaacc 6387874  T
Q  330 ctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaa 379  Q
    ||||||  ||||||||| ||||||||||||||||||||| ||| ||||||    
T  6387875 ctaactaatatgtgctctcatgttcatggtttgagaactcagataagaaa 6387924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 41394468 - 41394356
Alignment:
Q  46 attataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaagtttaa 145  Q
    |||||||||||||||||||||||||  || || | ||||||||||| ||  ||||||||||| ||||||||||||||||||||||||||| |||  ||||    
T  41394468 attataccaaactaccataataaaatgttgtgtttaacttagcatcaaattacaaaaattaatgcacaaaatcataagtttcataagtctataaacttaa 41394369  T
Q  146 gtcatccataaaa 158  Q
    |||||||||||||    
T  41394368 gtcatccataaaa 41394356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 226 - 394
Target Start/End: Complemental strand, 44977161 - 44976991
Alignment:
Q  226 aactagttaattttttcaaaaggt--caacaaacaccaccacaaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatc 323  Q
    ||||||||||||| ||||||||||  |||  | ||| |||||||||||||| || |||||  ||| |   || ||||||||||||| ||||||| |||||    
T  44977161 aactagttaatttcttcaaaaggttacaaacagcactaccacaaccctaactggtgtcgctctcatccgtgtcgaaatctgaattttcaccgtcagaatc 44977062  T
Q  324 gcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacattt 394  Q
    | ||| ||||| ||||||||||||| ||||||||||||||||||| | || |||||| |||||||||||||    
T  44977061 gtaactctaacaggtatgtgctcccctgttcatggtttgagaactcatagtagaaagaaaaagaaacattt 44976991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 397
Target Start/End: Original strand, 8029571 - 8029680
Alignment:
Q  288 accgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaaga 387  Q
    |||| ||| ||||| |||||||| |||||||||||||||||  |||||||||||||||||| ||||||| ||||||||| | ||||||||||| ||||||    
T  8029571 accggcgtggaaatatgaatttctaccgtcggaatcgcaacattaactggtatgtgctcccctgttcatagtttgagaattcagagaagaaagaaaaaga 8029670  T
Q  388 aacatttcat 397  Q
    ||| ||||||    
T  8029671 aacgtttcat 8029680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 18984949 - 18984857
Alignment:
Q  32 aattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagt 124  Q
    ||||||||||  | ||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| | |||||||||||||||    
T  18984949 aattacaaaggaaaattataccaaactaccataataaaacattttgctcaacttagcatcaaaatacaaaaattagcacacaaaatcataagt 18984857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 299 - 397
Target Start/End: Original strand, 27974734 - 27974831
Alignment:
Q  299 aatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||| |||| ||||||    
T  27974734 aatctaaatttccaccgtcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaacttagagaagaaag-aaaacaaacgtttcat 27974831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 299 - 397
Target Start/End: Original strand, 28032003 - 28032100
Alignment:
Q  299 aatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||| |||| ||||||    
T  28032003 aatctaaatttccaccgtcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaacttagagaagaaag-aaaacaaacgtttcat 28032100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 27974637 - 27974737
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||| |||||||||||||||   || |||||||||| |||||||||||| ||| | ||||| ||||||||||||||||||    
T  27974637 aactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaatcctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccgtcggaat 27974736  T
Q  323 c 323  Q
    |    
T  27974737 c 27974737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 28031906 - 28032006
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||| |||||||||||||||   || |||||||||| |||||||||||| ||| | ||||| ||||||||||||||||||    
T  28031906 aactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaatcctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccgtcggaat 28032005  T
Q  323 c 323  Q
    |    
T  28032006 c 28032006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 24082810 - 24082716
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagt 124  Q
    ||||||||||||  | |||||||||||||| ||||||||||| ||||| |||| |||||||| ||  ||||||||| |||| |||||||||||||    
T  24082810 ttaattacaaaggaaaattataccaaactatcataataaaacgttatgttcaatttagcatcaaagtacaaaaatttacgcgcaaaatcataagt 24082716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 27878144 - 27878219
Alignment:
Q  83 cttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat-aagtctttaagtttaagtcatccataaaa 158  Q
    |||| |||| ||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  27878144 cttaacatcaaaatacaaaaat-aacgcacaaaatcataagtttcataaagtctctaagtttaagtcatctataaaa 27878219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 28018325 - 28018400
Alignment:
Q  83 cttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat-aagtctttaagtttaagtcatccataaaa 158  Q
    |||| |||| ||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  28018325 cttaacatcaaaatacaaaaat-aacgcacaaaatcataagtttcataaagtctctaagtttaagtcatctataaaa 28018400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 27869609 - 27869677
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccacca---caaccctaaccggcgtcgcaatcaccg 291  Q
    ||||||||||||| |||||||||||||||||||||||||   |||||||||||||  | ||||||||||    
T  27869609 aactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaaccctaaccgggattgcaatcaccg 27869677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 27915088 - 27915163
Alignment:
Q  83 cttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat-aagtctttaagtttaagtcatccataaaa 158  Q
    |||| |||| ||| |||||||||| |||||||||||||||||||| | |||||| ||||||||||||||| ||||||    
T  27915088 cttaacatcaaaatacaaaaatta-cgcacaaaatcataagtttcctaaagtctctaagtttaagtcatctataaaa 27915163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 27961507 - 27961582
Alignment:
Q  83 cttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat-aagtctttaagtttaagtcatccataaaa 158  Q
    |||| |||| ||| |||||||||| |||||||||||||||||||| | |||||| ||||||||||||||| ||||||    
T  27961507 cttaacatcaaaatacaaaaatta-cgcacaaaatcataagtttcctaaagtctctaagtttaagtcatctataaaa 27961582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 35446968 - 35447028
Alignment:
Q  73 ttatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagt 133  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||||  ||||||||| ||||    
T  35446968 ttatgttcaacttagcatcaaaacacaaaaattaacgcgcaaaattctaagtttcaaaagt 35447028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 24082543 - 24082472
Alignment:
Q  315 gtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaag 386  Q
    |||||||||| |||  |||||| ||||||||| | |||||||| |||||||||||||| ||||||| |||||    
T  24082543 gtcggaatcgtaactttaactgttatgtgctctcctgttcatgatttgagaacttagataagaaagaaaaag 24082472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 27876573 - 27876630
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttag 87  Q
    |||||||||||  || |||||||||||||||| |||||| || |||||||||||||||    
T  27876573 ttaattacaaaagcaaattataccaaactaccgtaataatacgttatgctcaacttag 27876630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 28016754 - 28016811
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttag 87  Q
    |||||||||||  || |||||||||||||||| |||||| || |||||||||||||||    
T  28016754 ttaattacaaaagcaaattataccaaactaccgtaataatacgttatgctcaacttag 28016811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 19484771 - 19484687
Alignment:
Q  51 accaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    ||||||||||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  19484771 accaaactaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 19484687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 3007538 - 3007611
Alignment:
Q  297 gaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaactta 370  Q
    ||||||| ||||| || | | |||||| |||||||||||| ||||| ||| | ||||||| |||||||||||||    
T  3007538 gaaatctaaattttcatctttggaatcccaaccctaactgatatgtactctcttgttcatagtttgagaactta 3007611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 226 - 397
Target Start/End: Complemental strand, 89714 - 89540
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||| ||||||| ||||||||||||||||| |||| |||   ||||||||||||||||| |||| || |||  ||||| ||||||||||||||||||||    
T  89714 aactatttaatttcttcaaaaggtcaacaaagaccatcactgcaaccctaaccggcgtcgtaatcgcctacggcgaaatatgaatttccaccgtcggaat 89615  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  89614 cgcaaccctaactgttatatgcttccatgttcatggtttgagaactcagagaagaaagaaaaagaaacgtttcat 89540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 89905 - 89777
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||| |||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||    
T  89905 ttaagtacaaagacaaattatacgaaactaccataataaaatattatgcgcaacttagcatcaaaatacaaaaattaatgcacaaaatcataagtttcat 89806  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| ||| |||||| |||||||||||    
T  89805 aagtctctaaatttaagccatccataaaa 89777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 21385968 - 21386096
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||  | |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  21385968 ttaattacaaaggaaaattataccaaactaccataataaaacgttatgctcaacttagcatcaaaatacaaaaattaacgcacaaaataataagtttcat 21386067  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| ||||||||||||||||||||||    
T  21386068 aagtctctaagtttaagtcatccataaaa 21386096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 226 - 389
Target Start/End: Complemental strand, 49458796 - 49458635
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacac---caccacaaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||       
T  49458796 aactagttaatttcttcaaaaggtcaacaaacactaccaccacaaccctaaccggcgacgcaatcaccgacgtcgatatatgaatttccaccgtcgg--- 49458700  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaa 389  Q
      ||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||    
T  49458699 --caaccctaactggtatgtgcttccattttcatggtttgagaactcagagaggaaagaaaaagaaa 49458635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 49458986 - 49458858
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    ||||||||||||  | |||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  49458986 ttaattacaaagggaaattatatcaaactaccatagtaaaacattatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataaatttcat 49458887  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| ||||||||||||||||||||||    
T  49458886 aagtctctaagtttaagtcatccataaaa 49458858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 229 - 397
Target Start/End: Complemental strand, 43173330 - 43173159
Alignment:
Q  229 tagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgc 325  Q
    |||||||||| ||||||||||||||||||||| || |   ||||||||||||| |||||||||||  ||| ||||| ||| |||| | ||||||||||||    
T  43173330 tagttaatttcttcaaaaggtcaacaaacaccgccgccgcaaccctaaccggcatcgcaatcaccagcgtcgaaatatgagtttctatcgtcggaatcgc 43173231  T
Q  326 aaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||| ||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||| ||||||    
T  43173230 aactctaactggtatgtgctcccctattcatggtttgaaaacttagagaagaaagaaaaagaaacgtttcat 43173159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 226 - 378
Target Start/End: Original strand, 4962380 - 4962535
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||| |||||||||||||||   ||||||||||  ||||||||||| ||| || ||||  ||||||||||||||| ||||    
T  4962380 aactagttaatttcttcaaaaggttaacaaacaccaccaccgcaaccctaaccaacgtcgcaatcatcgatgtcgaaacatgaatttccaccgtctgaat 4962479  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaa 378  Q
    |||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  4962480 cgcagccctaactgatatgtgctcccctgttcatggtttgagaactcagagaagaa 4962535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 273 - 397
Target Start/End: Complemental strand, 16155529 - 16155405
Alignment:
Q  273 accggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttaga 372  Q
    |||||||||| ||||||||  || ||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||    
T  16155529 accggcgtcgtaatcaccggtgtcgaaatctaaatttccactgtcggaattgcaaccctaactggtatgtgctcccctgttgatggtttgagaactcaga 16155430  T
Q  373 gaagaaagcaaaagaaacatttcat 397  Q
    |||||||| ||||||||||||||||    
T  16155429 gaagaaagaaaaagaaacatttcat 16155405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 226 - 390
Target Start/End: Complemental strand, 33693696 - 33693529
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||| ||||||| ||||||||||||||||||||||||||   |||| ||  ||||||||||||||| | | ||||||||||||||| | |||||| |||    
T  33693696 aactacttaatttcttcaaaaggtcaacaaacaccaccactgcaaccgtagtcggcgtcgcaatcacaggcattgaaatctgaattttccccgtcgaaat 33693597  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaac 390  Q
      ||||| ||||||||||||||| || ||||||||||||||||| | ||||||||||| |||||||||    
T  33693596 tacaaccataactggtatgtgcttccctgttcatggtttgagaattcagagaagaaagaaaaagaaac 33693529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 33693889 - 33693758
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacat---tatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagttt 126  Q
    |||||||||||| || |||||||||||||| ||||||||||| |   ||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  33693889 ttaattacaaaggcaaattataccaaactatcataataaaacgtcgttatactcaacttaacatcaaaatacaaaaattaacgcacaaaatcataagttt 33693790  T
Q  127 cataagtctttaagtttaagtcatccataaaa 158  Q
    ||||||||| |||||||||| |||||||||||    
T  33693789 cataagtctctaagtttaagccatccataaaa 33693758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 4962190 - 4962318
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||| |||| | |||||||||||||||| ||||||||  ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||     
T  4962190 ttaattaccaagataaattataccaaactaccgtaataaaatgttatgttcaacttagcatcaaaatacaaaaattaacgcacaaaatcataagtttcac 4962289  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| |||||||||| | |||||||||    
T  4962290 aagtctctaagtttaagccttccataaaa 4962318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 21386158 - 21386332
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||| |||||||||||||   ||||||||||  | ||   | ||||||||| | |||| |||||||| ||||||||||    
T  21386158 aactagttaatttcttcaaaaggtcatcaaacaccaccaccgcaaccctaaccaacatccttaacaccgacgtcgcaatcggaatttcccccgtcggaat 21386257  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    || ||||||||||||||||||||| |||||| ||| ||| |||||| ||| || |||| ||||||||||||||||    
T  21386258 cgtaaccctaactggtatgtgctctcatgtttatgttttaagaactcagataaaaaagaaaaagaaacatttcat 21386332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 7437038 - 7437132
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagt 124  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  7437038 ttaattacaaagacaaattatatcaaactaccataataaaacgttatgcttaacttagcatcaaaatacaaaaattaacgcacaaaatcataagt 7437132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 1666485 - 1666391
Alignment:
Q  46 attataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctttaag 140  Q
    |||||| ||||||| ||| |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  1666485 attataacaaactatcattataaaatattatgcttaacttagcatcaaaatacaaaaattaacgcacaaaatcataagtttcataagtctctaag 1666391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 7437218 - 7437381
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||  ||||||| || |||||||||||||||   ||| |||||| ||||||||||||| ||||| |||||||||||||||||||           
T  7437218 aactagttaattacttcaaaaagtaaacaaacaccaccaccgcaactctaaccagcgtcgcaatcactgacgtcgaaatctgaatttccaccg------- 7437310  T
Q  323 cgcaaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
       |||| ||||||| |||||||||| |||||||| ||||||||| |||||||||||| ||||||||| ||||||    
T  7437311 ---aaccttaactggcatgtgctcccctgttcatgatttgagaac-tagagaagaaagaaaaagaaacgtttcat 7437381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 43173496 - 43173417
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttc 127  Q
    |||| ||||||||||| ||||||| |||||||||||||| |||| ||| || ||||||||||||||||||||||||||||    
T  43173496 tataacaaactaccatgataaaacgttatgctcaacttaacatcaaaatacgaaaattaacgcacaaaatcataagtttc 43173417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 7667236 - 7667173
Alignment:
Q  326 aaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaa 389  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||    
T  7667236 aaccctaactggtatgtgctctcctgttcatggtttgagaactaagagaagaaagaaaaagaaa 7667173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 32766575 - 32766503
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaa 102  Q
    |||||| |||||||| ||||||| || ||||||||||||||| |||||||||||||| |||| ||| ||||||    
T  32766575 ttaattgcaaagacaaattatactaatctaccataataaaacgttatgctcaacttaacatcaaaatacaaaa 32766503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 49296675 - 49296588
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  49296675 tataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 49296588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 53836519 - 53836432
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  53836519 tataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 53836432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 7437125 - 7437157
Alignment:
Q  126 tcataagtctttaagtttaagtcatccataaaa 158  Q
    ||||||||||||||||||||| |||||||||||    
T  7437125 tcataagtctttaagtttaagccatccataaaa 7437157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 229 - 397
Target Start/End: Complemental strand, 34218858 - 34218688
Alignment:
Q  229 tagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgc 325  Q
    |||||||||| |||||| | |||||||||||||||||   ||||||||| | |||| ||||||||| ||| |||||||||||||||||||||||||| ||    
T  34218858 tagttaatttcttcaaa-gatcaacaaacaccaccaccgcaaccctaactgacgtcacaatcaccggcgtcgaaatctgaatttccaccgtcggaattgc 34218760  T
Q  326 aaccctaactggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaacatttcat 397  Q
    ||||||||||| ||||||||||| | ||||||||||||||||| |||||||| || |||||| || ||||||    
T  34218759 aaccctaactgatatgtgctcccctattcatggtttgagaactcagagaagagagaaaaagacacgtttcat 34218688  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 29716383 - 29716509
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcat 129  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||| ||| | |||||||||  ||||||||||||||||||||    
T  29716383 ttaattacaaaggcaaattataccaaactaccataataaaatgttatgctcaacttagcatcaaaatataaaaattaa--cacaaaatcataagtttcat 29716480  T
Q  130 aagtctttaagtttaagtcatccataaaa 158  Q
    |||||| ||||||||||||||||| ||||    
T  29716481 aagtctctaagtttaagtcatccacaaaa 29716509  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 29716571 - 29716683
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccac---aaccctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| |||||||||||||||| |||||||||   ||||||||||| ||||| ||||| ||  || |||| ||||||||||||||||| |||    
T  29716571 aactagttaatttcttcaaaaggtcaacaagcaccaccaccgtaaccctaaccgacgtcgtaatcatcggtgtcgaaaactgaatttccaccgtcgaaat 29716670  T
Q  323 cgcaaccctaact 335  Q
    |||||||||||||    
T  29716671 cgcaaccctaact 29716683  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 15286001 - 15286111
Alignment:
Q  30 ttaattacaaag-acagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttca 128  Q
    |||||||||||| | | |||||||||| ||||||||||||| | ||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||     
T  15286001 ttaattacaaaggaaaaattataccaagctaccataataaa-cgttatgctcaacttagcatcaaaatacaaaaattaaggcacaaaatcttaagtttct 15286099  T
Q  129 taagtctttaag 140  Q
    ||| ||| ||||    
T  15286100 taattctctaag 15286111  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 37797658 - 37797745
Alignment:
Q  48 tataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| ||||||||||||||||||    
T  37797658 tataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataagtttcataagtct 37797745  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 5650317 - 5650403
Alignment:
Q  49 ataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    ||||||||| ||||||| |||    |||||| ||||||| ||| ||| | |||||||||| ||||||| ||||||||||||||||||    
T  5650317 ataccaaaccaccataaaaaagtggtatgcttaacttagtatcaaaatagaaaaattaactcacaaaagcataagtttcataagtct 5650403  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 4841032 - 4841090
Alignment:
Q  75 atgctcaacttagcatcgaaacacaaaaatta--acgcacaaaatcataagtttcataa 131  Q
    ||||||||||||||||  ||||||||||||||  ||||| || ||||||||||||||||    
T  4841032 atgctcaacttagcataaaaacacaaaaattaacacgcaaaatatcataagtttcataa 4841090  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 35701801 - 35701748
Alignment:
Q  73 ttatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttc 127  Q
    ||||||||||||||||||  ||| |||||| ||||| ||||||||||||||||||    
T  35701801 ttatgctcaacttagcatttaaatacaaaa-ttaactcacaaaatcataagtttc 35701748  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 21490189 - 21490108
Alignment:
Q  55 aactaccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtctt 136  Q
    |||||||||||||||| |||||| |||||| | |||| ||| |||||||  |||   ||||||||||||| || ||||||||    
T  21490189 aactaccataataaaatattatgttcaactaaacatcaaaatacaaaaaaaaacttgcaaaatcataagtctcttaagtctt 21490108  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 28622734 - 28622795
Alignment:
Q  74 tatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagtttcataagtct 135  Q
    |||||| ||||||| ||| ||| | |||||||||| ||||||| |||| |||||||||||||    
T  28622734 tatgcttaacttagtatcaaaatagaaaaattaacacacaaaagcataggtttcataagtct 28622795  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 3032723 - 3032651
Alignment:
Q  30 ttaattacaaagacagattataccaaactaccataataaaacattatgctcaacttagcatcgaaacacaaaa 102  Q
    ||||||| ||| ||| | |||||| |||||||||||||||   ||||||||||||||| ||| ||| ||||||    
T  3032723 ttaattataaatacaaaatatacccaactaccataataaagtgttatgctcaacttagaatcaaaatacaaaa 3032651  T

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Target: scaffold0573 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 226 - 379
Target Start/End: Complemental strand, 9293 - 9133
Alignment:
Q  226 aactagttaattttttcaaaaggtcaacaaacaccaccacaac---cctaaccggcgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaat 322  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||   ||||||||| |||||||| | || ||||||||| |||||||||||||||| |||    
T  9293 aactagttaatttcttcaaaaggacaacaaacactaccacaacaaccctaaccggtgtcgcaataaacggcgttgaaatatgaatttccaccgtcgaaat 9194  T
Q  323 cgcaaccctaactgg----tatgtgctcccatgttcatggtttgagaacttagagaagaaa 379  Q
    | |||||||||||||    ||||||||||| ||||||||||||||||||| ||||||||||    
T  9193 cacaaccctaactggtatatatgtgctcccctgttcatggtttgagaactcagagaagaaa 9133  T

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Target: scaffold0573; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 9444 - 9380
Alignment:
Q  60 ccataataaaacattatgctcaacttagcatcgaaacacaaaaattaacgcacaaaatcataagt 124  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  9444 ccataataaaatattatgctcaacttagcatcaaaatacaaaaattaacgcacaaaatcataagt 9380  T

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Target: scaffold0037 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 36965 - 37020
Alignment:
Q  335 tggtatgtgctcccatgttcatggtttgagaacttagagaagaaagcaaaagaaac 390  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  36965 tggtatgtactcccatgttcatggtttgagaacttagagaagaaagaaaaagaaac 37020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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